Analysis of interatomic Contacts of Structural Units in PDB entry:
8OX7

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8OX7 entry

There are 3 chains in PDB entry 8OX7 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	LYS 24	ARG 351
A	GLN 16	SER 453
A	LYS 455	ARG 1228

There are 62 helices in PDB entry 8OX7. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	46	51	Right-handed alpha
Helix 2	AA2	B	52	74	Right-handed alpha
Helix 3	AA3	B	91	95	Right-handed 310
Helix 4	AA4	B	131	136	Right-handed alpha
Helix 5	AA5	B	139	144	Right-handed alpha
Helix 6	AA6	B	146	152	Right-handed alpha
Helix 7	AA7	B	157	161	Right-handed 310
Helix 8	AA8	B	172	177	Right-handed alpha
Helix 9	AA9	B	206	212	Right-handed alpha
Helix 10	AB1	B	222	227	Right-handed alpha
Helix 11	AB2	B	250	253	Right-handed 310
Helix 12	AB3	B	254	262	Right-handed alpha
Helix 13	AB4	B	301	305	Right-handed 310
Helix 14	AB5	B	322	350	Right-handed alpha
Helix 15	AB6	A	107	117	Right-handed alpha
Helix 16	AB7	A	118	132	Right-handed alpha
Helix 17	AB8	A	141	174	Right-handed alpha
Helix 18	AB9	A	219	223	Right-handed 310
Helix 19	AC1	A	243	248	Right-handed alpha
Helix 20	AC2	A	252	259	Right-handed alpha
Helix 21	AC3	A	289	291	Right-handed 310
Helix 22	AC4	A	313	316	Right-handed 310
Helix 23	AC5	A	317	323	Right-handed alpha
Helix 24	AC6	A	331	366	Right-handed alpha
Helix 25	AC7	A	380	396	Right-handed alpha
Helix 26	AC8	A	397	400	Right-handed 310
Helix 27	AC9	A	403	422	Right-handed alpha
Helix 28	AD1	A	423	426	Right-handed 310
Helix 29	AD2	A	442	447	Right-handed 310
Helix 30	AD3	A	510	519	Right-handed alpha
Helix 31	AD4	A	521	532	Right-handed alpha
Helix 32	AD5	A	552	565	Right-handed alpha
Helix 33	AD6	A	621	626	Right-handed alpha
Helix 34	AD7	A	635	649	Right-handed alpha
Helix 35	AD8	A	662	679	Right-handed alpha
Helix 36	AD9	A	682	695	Right-handed alpha
Helix 37	AE1	A	713	724	Right-handed alpha
Helix 38	AE2	A	735	746	Right-handed alpha
Helix 39	AE3	A	758	773	Right-handed alpha
Helix 40	AE4	A	803	810	Right-handed alpha
Helix 41	AE5	A	834	858	Right-handed alpha
Helix 42	AE6	A	869	884	Right-handed alpha
Helix 43	AE7	A	894	896	Right-handed 310
Helix 44	AE8	A	897	904	Right-handed alpha
Helix 45	AE9	A	916	921	Right-handed alpha
Helix 46	AF1	A	928	930	Right-handed 310
Helix 47	AF2	A	931	938	Right-handed alpha
Helix 48	AF3	A	938	969	Right-handed alpha
Helix 49	AF4	A	970	972	Right-handed 310
Helix 50	AF5	A	981	988	Right-handed alpha
Helix 51	AF6	A	994	1004	Right-handed alpha
Helix 52	AF7	A	1008	1014	Right-handed alpha
Helix 53	AF8	A	1015	1018	Right-handed 310
Helix 54	AF9	A	1019	1024	Right-handed alpha
Helix 55	AG1	A	1029	1056	Right-handed alpha
Helix 56	AG2	A	1068	1092	Right-handed alpha
Helix 57	AG3	A	1097	1118	Right-handed alpha
Helix 58	AG4	A	1119	1126	Right-handed alpha
Helix 59	AG5	A	1134	1140	Right-handed alpha
Helix 60	AG6	A	1142	1171	Right-handed alpha
Helix 61	AG7	A	1173	1181	Right-handed alpha
Helix 62	AG8	A	1216	1223	Right-handed alpha

There are 11 sheets in PDB entry 8OX7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	40	41	first strand
Strand 2	A	1095	1096	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	77	81	first strand
Strand 2	B	307	314	anti-parallel
Strand 3	B	118	125	anti-parallel
Strand 4	B	269	276	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	103	110	first strand
Strand 2	B	289	296	anti-parallel
Strand 3	B	182	188	anti-parallel
Strand 4	B	194	196	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	64	67	first strand
Strand 2	A	262	265	anti-parallel
Strand 3	A	277	281	anti-parallel
Strand 4	A	284	288	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	186	190	first strand
Strand 2	A	177	181	anti-parallel
Strand 3	A	199	203	anti-parallel
Strand 4	A	305	310	anti-parallel
Strand 5	A	212	217	anti-parallel
Strand 6	A	293	294	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	237	240	first strand
Strand 2	A	224	227	anti-parallel
Strand 3	A	299	301	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	435	436	first strand
Strand 2	A	924	925	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	754	757	first strand
Strand 2	A	797	802	parallel
Strand 3	A	862	866	parallel
Strand 4	A	727	731	parallel
Strand 5	A	450	453	parallel
Strand 6	A	888	892	parallel
Strand 7	A	906	909	parallel

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There are 9 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	474	476	first strand
Strand 2	A	460	471	anti-parallel
Strand 3	A	699	710	anti-parallel
Strand 4	A	652	661	anti-parallel
Strand 5	A	614	620	anti-parallel
Strand 6	A	602	608	anti-parallel
Strand 7	A	588	594	anti-parallel
Strand 8	A	576	581	anti-parallel
Strand 9	A	567	572	anti-parallel

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There are 9 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	474	476	first strand
Strand 2	A	460	471	anti-parallel
Strand 3	A	699	710	anti-parallel
Strand 4	A	652	661	anti-parallel
Strand 5	A	614	620	anti-parallel
Strand 6	A	602	608	anti-parallel
Strand 7	A	588	594	anti-parallel
Strand 8	A	576	581	anti-parallel
Strand 9	A	584	585	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	538	540	first strand
Strand 2	A	547	549	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8OX7

Analysis of interatomic Contacts of Structural Units in PDB entry:
8OX7