Analysis of interatomic Contacts of Structural Units in PDB entry:
8OX8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8OX8 entry

There are 3 chains in PDB entry 8OX8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 16SER 453
A
 LYS 455ARG 1228
B
 THR 25ARG 351
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 62 helices in PDB entry 8OX8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
72 76Right-handed 310
Helix 2
AA2
A
106 116Right-handed alpha
Helix 3
AA3
A
118 132Right-handed alpha
Helix 4
AA4
A
144 175Right-handed alpha
Helix 5
AA5
A
190 194Right-handed 310
Helix 6
AA6
A
219 223Right-handed 310
Helix 7
AA7
A
243 248Right-handed alpha
Helix 8
AA8
A
252 258Right-handed alpha
Helix 9
AA9
A
289 291Right-handed 310
Helix 10
AB1
A
313 316Right-handed 310
Helix 11
AB2
A
317 322Right-handed alpha
Helix 12
AB3
A
331 366Right-handed alpha
Helix 13
AB4
A
380 396Right-handed alpha
Helix 14
AB5
A
397 400Right-handed 310
Helix 15
AB6
A
403 422Right-handed alpha
Helix 16
AB7
A
442 448Right-handed 310
Helix 17
AB8
A
509 519Right-handed alpha
Helix 18
AB9
A
521 534Right-handed alpha
Helix 19
AC1
A
552 565Right-handed alpha
Helix 20
AC2
A
621 627Right-handed alpha
Helix 21
AC3
A
635 649Right-handed alpha
Helix 22
AC4
A
662 679Right-handed alpha
Helix 23
AC5
A
682 695Right-handed alpha
Helix 24
AC6
A
713 724Right-handed alpha
Helix 25
AC7
A
735 746Right-handed alpha
Helix 26
AC8
A
758 773Right-handed alpha
Helix 27
AC9
A
803 810Right-handed alpha
Helix 28
AD1
A
834 858Right-handed alpha
Helix 29
AD2
A
869 885Right-handed alpha
Helix 30
AD3
A
894 896Right-handed 310
Helix 31
AD4
A
897 904Right-handed alpha
Helix 32
AD5
A
916 921Right-handed alpha
Helix 33
AD6
A
928 930Right-handed 310
Helix 34
AD7
A
931 938Right-handed alpha
Helix 35
AD8
A
938 963Right-handed alpha
Helix 36
AD9
A
963 969Right-handed alpha
Helix 37
AE1
A
981 992Right-handed alpha
Helix 38
AE2
A
993 1004Right-handed alpha
Helix 39
AE3
A
1008 1014Right-handed alpha
Helix 40
AE4
A
1015 1018Right-handed 310
Helix 41
AE5
A
1019 1024Right-handed alpha
Helix 42
AE6
A
1030 1057Right-handed alpha
Helix 43
AE7
A
1068 1092Right-handed alpha
Helix 44
AE8
A
1097 1118Right-handed alpha
Helix 45
AE9
A
1135 1140Right-handed alpha
Helix 46
AF1
A
1142 1171Right-handed alpha
Helix 47
AF2
A
1173 1181Right-handed alpha
Helix 48
AF3
A
1182 1185Right-handed 310
Helix 49
AF4
A
1216 1223Right-handed alpha
Helix 50
AF5
B
46 75Right-handed alpha
Helix 51
AF6
B
91 96Right-handed 310
Helix 52
AF7
B
131 136Right-handed alpha
Helix 53
AF8
B
139 144Right-handed alpha
Helix 54
AF9
B
146 151Right-handed alpha
Helix 55
AG1
B
154 158Right-handed 310
Helix 56
AG2
B
172 177Right-handed alpha
Helix 57
AG3
B
206 212Right-handed alpha
Helix 58
AG4
B
222 227Right-handed alpha
Helix 59
AG5
B
239 243Right-handed 310
Helix 60
AG6
B
254 262Right-handed alpha
Helix 61
AG7
B
301 305Right-handed 310
Helix 62
AG8
B
322 350Right-handed alpha
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There are 10 sheets in PDB entry 8OX8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
64 66first strand
Strand 2
A
262 265anti-parallel
Strand 3
A
277 280anti-parallel
Strand 4
A
285 288anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
186 187first strand
Strand 2
A
179 181anti-parallel
Strand 3
A
199 203anti-parallel
Strand 4
A
305 310anti-parallel
Strand 5
A
212 217anti-parallel
Strand 6
A
293 294anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
237 240first strand
Strand 2
A
224 227anti-parallel
Strand 3
A
299 301anti-parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
754 757first strand
Strand 2
A
797 802parallel
Strand 3
A
862 866parallel
Strand 4
A
727 731parallel
Strand 5
A
450 453parallel
Strand 6
A
888 892parallel
Strand 7
A
906 910parallel
Strand 8
A
924 926parallel
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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
474 476first strand
Strand 2
A
460 471anti-parallel
Strand 3
A
699 710anti-parallel
Strand 4
A
655 661anti-parallel
Strand 5
A
614 620anti-parallel
Strand 6
A
602 608anti-parallel
Strand 7
A
588 594anti-parallel
Strand 8
A
576 581anti-parallel
Strand 9
A
567 572anti-parallel
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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
474 476first strand
Strand 2
A
460 471anti-parallel
Strand 3
A
699 710anti-parallel
Strand 4
A
655 661anti-parallel
Strand 5
A
614 620anti-parallel
Strand 6
A
602 608anti-parallel
Strand 7
A
588 594anti-parallel
Strand 8
A
576 581anti-parallel
Strand 9
A
584 585anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
538 540first strand
Strand 2
A
547 549anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1095 1096first strand
Strand 2
B
40 41anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
77 81first strand
Strand 2
B
307 314anti-parallel
Strand 3
B
118 125anti-parallel
Strand 4
B
269 276anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
102 109first strand
Strand 2
B
290 297anti-parallel
Strand 3
B
182 188anti-parallel
Strand 4
B
194 196anti-parallel
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