Analysis of interatomic Contacts of Structural Units in PDB entry:
8OXA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8OXA entry

There are 2 chains in PDB entry 8OXA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 63ARG 1182
B
 LYS 24ARG 351
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 62 helices in PDB entry 8OXA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
107 109Right-handed 310
Helix 2
AA2
A
110 118Right-handed alpha
Helix 3
AA3
A
118 133Right-handed alpha
Helix 4
AA4
A
141 175Right-handed alpha
Helix 5
AA5
A
219 223Right-handed 310
Helix 6
AA6
A
243 248Right-handed alpha
Helix 7
AA7
A
252 258Right-handed alpha
Helix 8
AA8
A
289 291Right-handed 310
Helix 9
AA9
A
317 322Right-handed alpha
Helix 10
AB1
A
331 366Right-handed alpha
Helix 11
AB2
A
370 374Right-handed 310
Helix 12
AB3
A
380 396Right-handed alpha
Helix 13
AB4
A
397 400Right-handed 310
Helix 14
AB5
A
401 421Right-handed alpha
Helix 15
AB6
A
441 447Right-handed 310
Helix 16
AB7
A
510 519Right-handed alpha
Helix 17
AB8
A
521 534Right-handed alpha
Helix 18
AB9
A
552 565Right-handed alpha
Helix 19
AC1
A
621 627Right-handed alpha
Helix 20
AC2
A
635 649Right-handed alpha
Helix 21
AC3
A
662 677Right-handed alpha
Helix 22
AC4
A
683 695Right-handed alpha
Helix 23
AC5
A
713 724Right-handed alpha
Helix 24
AC6
A
735 746Right-handed alpha
Helix 25
AC7
A
757 770Right-handed alpha
Helix 26
AC8
A
791 795Right-handed 310
Helix 27
AC9
A
803 811Right-handed alpha
Helix 28
AD1
A
840 859Right-handed alpha
Helix 29
AD2
A
869 885Right-handed alpha
Helix 30
AD3
A
894 896Right-handed 310
Helix 31
AD4
A
897 904Right-handed alpha
Helix 32
AD5
A
916 921Right-handed alpha
Helix 33
AD6
A
928 930Right-handed 310
Helix 34
AD7
A
931 938Right-handed alpha
Helix 35
AD8
A
938 963Right-handed alpha
Helix 36
AD9
A
963 969Right-handed alpha
Helix 37
AE1
A
970 972Right-handed 310
Helix 38
AE2
A
981 988Right-handed alpha
Helix 39
AE3
A
994 1004Right-handed alpha
Helix 40
AE4
A
1008 1015Right-handed alpha
Helix 41
AE5
A
1016 1018Right-handed 310
Helix 42
AE6
A
1019 1024Right-handed alpha
Helix 43
AE7
A
1029 1057Right-handed alpha
Helix 44
AE8
A
1068 1092Right-handed alpha
Helix 45
AE9
A
1097 1114Right-handed alpha
Helix 46
AF1
A
1136 1140Right-handed alpha
Helix 47
AF2
A
1142 1171Right-handed alpha
Helix 48
AF3
A
1173 1181Right-handed alpha
Helix 49
AF4
B
46 74Right-handed alpha
Helix 50
AF5
B
91 96Right-handed 310
Helix 51
AF6
B
131 136Right-handed alpha
Helix 52
AF7
B
139 144Right-handed alpha
Helix 53
AF8
B
146 151Right-handed alpha
Helix 54
AF9
B
154 161Right-handed 310
Helix 55
AG1
B
172 177Right-handed alpha
Helix 56
AG2
B
206 212Right-handed alpha
Helix 57
AG3
B
222 227Right-handed alpha
Helix 58
AG4
B
239 243Right-handed 310
Helix 59
AG5
B
246 253Right-handed 310
Helix 60
AG6
B
254 262Right-handed alpha
Helix 61
AG7
B
301 305Right-handed 310
Helix 62
AG8
B
322 350Right-handed alpha
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There are 10 sheets in PDB entry 8OXA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
64 67first strand
Strand 2
A
262 265anti-parallel
Strand 3
A
277 281anti-parallel
Strand 4
A
284 288anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
186 190first strand
Strand 2
A
177 181anti-parallel
Strand 3
A
199 203anti-parallel
Strand 4
A
305 312anti-parallel
Strand 5
A
211 217anti-parallel
Strand 6
A
293 294anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
224 226first strand
Strand 2
A
238 240anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
435 436first strand
Strand 2
A
924 925anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
798 802first strand
Strand 2
A
862 866parallel
Strand 3
A
727 731parallel
Strand 4
A
450 453parallel
Strand 5
A
888 892parallel
Strand 6
A
906 909parallel
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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
460 469first strand
Strand 2
A
699 710anti-parallel
Strand 3
A
652 658anti-parallel
Strand 4
A
614 620anti-parallel
Strand 5
A
602 608anti-parallel
Strand 6
A
584 593anti-parallel
Strand 7
A
577 581anti-parallel
Strand 8
A
568 572anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
538 539first strand
Strand 2
A
548 549anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1095 1096first strand
Strand 2
B
40 41anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
77 80first strand
Strand 2
B
307 314anti-parallel
Strand 3
B
118 125anti-parallel
Strand 4
B
269 276anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
102 110first strand
Strand 2
B
289 297anti-parallel
Strand 3
B
182 188anti-parallel
Strand 4
B
194 196anti-parallel
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