Analysis of interatomic Contacts of Structural Units in PDB entry:
8OXB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8OXB entry

There are 2 chains in PDB entry 8OXB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 63ARG 1182
B
 LYS 24ARG 351
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 61 helices in PDB entry 8OXB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
107 109Right-handed 310
Helix 2
AA2
A
110 116Right-handed alpha
Helix 3
AA3
A
118 131Right-handed alpha
Helix 4
AA4
A
141 175Right-handed alpha
Helix 5
AA5
A
219 221Right-handed 310
Helix 6
AA6
A
243 248Right-handed alpha
Helix 7
AA7
A
252 259Right-handed alpha
Helix 8
AA8
A
317 322Right-handed alpha
Helix 9
AA9
A
331 370Right-handed alpha
Helix 10
AB1
A
371 374Right-handed 310
Helix 11
AB2
A
380 396Right-handed alpha
Helix 12
AB3
A
397 400Right-handed 310
Helix 13
AB4
A
401 422Right-handed alpha
Helix 14
AB5
A
423 426Right-handed 310
Helix 15
AB6
A
438 447Right-handed 310
Helix 16
AB7
A
510 519Right-handed alpha
Helix 17
AB8
A
521 532Right-handed alpha
Helix 18
AB9
A
541 545Right-handed 310
Helix 19
AC1
A
552 565Right-handed alpha
Helix 20
AC2
A
621 627Right-handed alpha
Helix 21
AC3
A
635 649Right-handed alpha
Helix 22
AC4
A
662 678Right-handed alpha
Helix 23
AC5
A
683 695Right-handed alpha
Helix 24
AC6
A
713 723Right-handed alpha
Helix 25
AC7
A
735 746Right-handed alpha
Helix 26
AC8
A
757 770Right-handed alpha
Helix 27
AC9
A
792 796Right-handed alpha
Helix 28
AD1
A
803 811Right-handed alpha
Helix 29
AD2
A
840 859Right-handed alpha
Helix 30
AD3
A
869 885Right-handed alpha
Helix 31
AD4
A
894 896Right-handed 310
Helix 32
AD5
A
897 904Right-handed alpha
Helix 33
AD6
A
931 938Right-handed alpha
Helix 34
AD7
A
938 963Right-handed alpha
Helix 35
AD8
A
963 968Right-handed alpha
Helix 36
AD9
A
969 972Right-handed 310
Helix 37
AE1
A
981 988Right-handed alpha
Helix 38
AE2
A
994 1001Right-handed alpha
Helix 39
AE3
A
1008 1015Right-handed alpha
Helix 40
AE4
A
1016 1018Right-handed 310
Helix 41
AE5
A
1019 1024Right-handed alpha
Helix 42
AE6
A
1029 1057Right-handed alpha
Helix 43
AE7
A
1069 1092Right-handed alpha
Helix 44
AE8
A
1097 1114Right-handed alpha
Helix 45
AE9
A
1136 1140Right-handed alpha
Helix 46
AF1
A
1142 1171Right-handed alpha
Helix 47
AF2
A
1173 1181Right-handed alpha
Helix 48
AF3
B
46 74Right-handed alpha
Helix 49
AF4
B
91 96Right-handed 310
Helix 50
AF5
B
131 136Right-handed alpha
Helix 51
AF6
B
139 144Right-handed alpha
Helix 52
AF7
B
146 151Right-handed alpha
Helix 53
AF8
B
154 161Right-handed 310
Helix 54
AF9
B
172 177Right-handed alpha
Helix 55
AG1
B
206 212Right-handed alpha
Helix 56
AG2
B
222 227Right-handed alpha
Helix 57
AG3
B
239 243Right-handed 310
Helix 58
AG4
B
246 253Right-handed 310
Helix 59
AG5
B
254 262Right-handed alpha
Helix 60
AG6
B
301 305Right-handed 310
Helix 61
AG7
B
322 350Right-handed alpha
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There are 10 sheets in PDB entry 8OXB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
64 67first strand
Strand 2
A
262 265anti-parallel
Strand 3
A
277 281anti-parallel
Strand 4
A
284 288anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
186 188first strand
Strand 2
A
179 181anti-parallel
Strand 3
A
199 203anti-parallel
Strand 4
A
305 312anti-parallel
Strand 5
A
211 217anti-parallel
Strand 6
A
293 294anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
238 241first strand
Strand 2
A
223 227anti-parallel
Strand 3
A
299 301anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
435 436first strand
Strand 2
A
924 925anti-parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
754 756first strand
Strand 2
A
797 802parallel
Strand 3
A
862 866parallel
Strand 4
A
727 731parallel
Strand 5
A
450 453parallel
Strand 6
A
888 892parallel
Strand 7
A
906 909parallel
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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
460 469first strand
Strand 2
A
699 710anti-parallel
Strand 3
A
655 658anti-parallel
Strand 4
A
614 620anti-parallel
Strand 5
A
602 608anti-parallel
Strand 6
A
584 593anti-parallel
Strand 7
A
577 581anti-parallel
Strand 8
A
568 572anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
538 539first strand
Strand 2
A
548 549anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1095 1096first strand
Strand 2
B
40 41anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
77 81first strand
Strand 2
B
307 314anti-parallel
Strand 3
B
118 125anti-parallel
Strand 4
B
269 276anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
102 110first strand
Strand 2
B
289 297anti-parallel
Strand 3
B
182 188anti-parallel
Strand 4
B
194 196anti-parallel
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