Analysis of interatomic Contacts of Structural Units in PDB entry:
8OXE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8OXE entry

There is 1 chain in PDB entry 8OXE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 8SER 320
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 8OXE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
17 25Right-handed alpha
Helix 2
AA2
A
26 37Right-handed alpha
Helix 3
AA3
A
48 52Right-handed 310
Helix 4
AA4
A
64 78Right-handed alpha
Helix 5
AA5
A
86 92Right-handed alpha
Helix 6
AA6
A
95 100Right-handed alpha
Helix 7
AA7
A
101 106Right-handed 310
Helix 8
AA8
A
125 131Right-handed alpha
Helix 9
AA9
A
134 138Right-handed 310
Helix 10
AB1
A
154 158Right-handed 310
Helix 11
AB2
A
167 171Right-handed 310
Helix 12
AB3
A
251 267Right-handed alpha
Helix 13
AB4
A
301 319Right-handed alpha
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There are 3 sheets in PDB entry 8OXE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
38 42first strand
Strand 2
A
10 16parallel
Strand 3
A
57 61parallel
Strand 4
A
82 84parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
114 116first strand
Strand 2
A
284 292parallel
Strand 3
A
270 278anti-parallel
Strand 4
A
186 193anti-parallel
Strand 5
A
196 203anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
120 123first strand
Strand 2
A
175 179anti-parallel
Strand 3
A
143 147anti-parallel
Strand 4
A
159 162anti-parallel
Strand 5
A
219 222anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il