Analysis of interatomic Contacts of Structural Units in PDB entry:
8OXG

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8OXG entry

There are 2 chains in PDB entry 8OXG (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 111	TYR 478
B	LYS 110	TYR 478

There are 23 helices in PDB entry 8OXG. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	119	123	Right-handed 310
Helix 2	AA2	A	124	128	Right-handed 310
Helix 3	AA3	A	146	151	Right-handed 310
Helix 4	AA4	A	152	161	Right-handed alpha
Helix 5	AA5	A	162	187	Right-handed alpha
Helix 6	AA6	A	192	209	Right-handed alpha
Helix 7	AA7	A	270	272	Right-handed 310
Helix 8	AA8	A	273	291	Right-handed alpha
Helix 9	AA9	A	296	310	Right-handed alpha
Helix 10	AB1	A	396	410	Right-handed alpha
Helix 11	AB2	A	417	423	Right-handed alpha
Helix 12	AB3	A	428	438	Right-handed alpha
Helix 13	AB4	B	119	124	Right-handed alpha
Helix 14	AB5	B	147	152	Right-handed alpha
Helix 15	AB6	B	152	162	Right-handed alpha
Helix 16	AB7	B	162	187	Right-handed alpha
Helix 17	AB8	B	192	209	Right-handed alpha
Helix 18	AB9	B	270	272	Right-handed 310
Helix 19	AC1	B	273	291	Right-handed alpha
Helix 20	AC2	B	296	310	Right-handed alpha
Helix 21	AC3	B	396	410	Right-handed alpha
Helix 22	AC4	B	417	422	Right-handed alpha
Helix 23	AC5	B	428	438	Right-handed alpha

There are 12 sheets in PDB entry 8OXG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	133	135	first strand
Strand 2	A	469	471	anti-parallel
Strand 3	A	455	464	anti-parallel
Strand 4	A	360	368	anti-parallel
Strand 5	A	323	324	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	133	135	first strand
Strand 2	A	469	471	anti-parallel
Strand 3	A	455	464	anti-parallel
Strand 4	A	360	368	anti-parallel
Strand 5	A	329	333	anti-parallel
Strand 6	A	343	345	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	215	225	first strand
Strand 2	A	248	256	anti-parallel
Strand 3	A	259	267	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	228	230	first strand
Strand 2	A	447	448	anti-parallel
Strand 3	A	375	376	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	312	315	first strand
Strand 2	A	318	321	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	415	416	first strand
Strand 2	A	382	385	anti-parallel
Strand 3	A	441	444	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	133	135	first strand
Strand 2	B	469	471	anti-parallel
Strand 3	B	455	464	anti-parallel
Strand 4	B	360	368	anti-parallel
Strand 5	B	323	324	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	133	135	first strand
Strand 2	B	469	471	anti-parallel
Strand 3	B	455	464	anti-parallel
Strand 4	B	360	368	anti-parallel
Strand 5	B	329	332	anti-parallel
Strand 6	B	343	345	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	215	225	first strand
Strand 2	B	248	256	anti-parallel
Strand 3	B	259	267	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	228	230	first strand
Strand 2	B	447	448	anti-parallel
Strand 3	B	375	376	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	312	315	first strand
Strand 2	B	318	321	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	415	416	first strand
Strand 2	B	382	385	anti-parallel
Strand 3	B	441	444	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8OXG

Analysis of interatomic Contacts of Structural Units in PDB entry:
8OXG