Analysis of interatomic Contacts of Structural Units in PDB entry:
8OXO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8OXO entry

There are 4 chains in PDB entry 8OXO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
E
 PRO 12THR 18
A
 ALA 1462VAL 3056
F
 PRO 12THR 18
B
 ALA 1462VAL 3056
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are167 helices in PDB entry 8OXO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1463 1478Right-handed alpha
Helix 2
AA2
A
1491 1509Right-handed alpha
Helix 3
AA3
A
1517 1524Right-handed alpha
Helix 4
AA4
A
1525 1529Right-handed 310
Helix 5
AA5
A
1531 1548Right-handed alpha
Helix 6
AA6
A
1552 1561Right-handed alpha
Helix 7
AA7
A
1568 1570Right-handed 310
Helix 8
AA8
A
1571 1583Right-handed alpha
Helix 9
AA9
A
1589 1604Right-handed alpha
Helix 10
AB1
A
1607 1609Right-handed 310
Helix 11
AB2
A
1610 1624Right-handed alpha
Helix 12
AB3
A
1627 1635Right-handed alpha
Helix 13
AB4
A
1638 1641Right-handed 310
Helix 14
AB5
A
1642 1658Right-handed alpha
Helix 15
AB6
A
1659 1661Right-handed 310
Helix 16
AB7
A
1663 1677Right-handed alpha
Helix 17
AB8
A
1693 1703Right-handed alpha
Helix 18
AB9
A
1705 1722Right-handed alpha
Helix 19
AC1
A
1726 1742Right-handed alpha
Helix 20
AC2
A
1743 1754Right-handed alpha
Helix 21
AC3
A
1759 1765Right-handed alpha
Helix 22
AC4
A
1766 1768Right-handed 310
Helix 23
AC5
A
1785 1789Right-handed 310
Helix 24
AC6
A
1791 1796Right-handed alpha
Helix 25
AC7
A
1801 1816Right-handed alpha
Helix 26
AC8
A
1827 1832Right-handed alpha
Helix 27
AC9
A
1834 1852Right-handed alpha
Helix 28
AD1
A
1856 1874Right-handed alpha
Helix 29
AD2
A
1902 1918Right-handed alpha
Helix 30
AD3
A
1926 1931Right-handed alpha
Helix 31
AD4
A
1937 1948Right-handed alpha
Helix 32
AD5
A
1950 1974Right-handed alpha
Helix 33
AD6
A
1985 1997Right-handed alpha
Helix 34
AD7
A
2000 2012Right-handed alpha
Helix 35
AD8
A
2028 2039Right-handed alpha
Helix 36
AD9
A
2041 2052Right-handed alpha
Helix 37
AE1
A
2056 2071Right-handed alpha
Helix 38
AE2
A
2074 2088Right-handed alpha
Helix 39
AE3
A
2092 2106Right-handed alpha
Helix 40
AE4
A
2123 2137Right-handed alpha
Helix 41
AE5
A
2140 2161Right-handed alpha
Helix 42
AE6
A
2168 2189Right-handed alpha
Helix 43
AE7
A
2194 2212Right-handed alpha
Helix 44
AE8
A
2216 2237Right-handed alpha
Helix 45
AE9
A
2241 2264Right-handed alpha
Helix 46
AF1
A
2268 2282Right-handed alpha
Helix 47
AF2
A
2289 2302Right-handed alpha
Helix 48
AF3
A
2304 2322Right-handed alpha
Helix 49
AF4
A
2327 2349Right-handed alpha
Helix 50
AF5
A
2352 2371Right-handed alpha
Helix 51
AF6
A
2376 2407Right-handed alpha
Helix 52
AF7
A
2407 2430Right-handed alpha
Helix 53
AF8
A
2435 2476Right-handed alpha
Helix 54
AF9
A
2480 2482Right-handed 310
Helix 55
AG1
A
2483 2494Right-handed alpha
Helix 56
AG2
A
2497 2507Right-handed alpha
Helix 57
AG3
A
2508 2511Right-handed 310
Helix 58
AG4
A
2512 2516Right-handed 310
Helix 59
AG5
A
2519 2525Right-handed alpha
Helix 60
AG6
A
2534 2552Right-handed alpha
Helix 61
AG7
A
2553 2555Right-handed 310
Helix 62
AG8
A
2556 2565Right-handed alpha
Helix 63
AG9
A
2567 2573Right-handed alpha
Helix 64
AH1
A
2592 2613Right-handed alpha
Helix 65
AH2
A
2613 2633Right-handed alpha
Helix 66
AH3
A
2635 2639Right-handed 310
Helix 67
AH4
A
2651 2656Right-handed alpha
Helix 68
AH5
A
2722 2742Right-handed alpha
Helix 69
AH6
A
2742 2749Right-handed alpha
Helix 70
AH7
A
2776 2781Right-handed alpha
Helix 71
AH8
A
2786 2792Right-handed alpha
Helix 72
AH9
A
2797 2809Right-handed alpha
Helix 73
AI1
A
2812 2826Right-handed alpha
Helix 74
AI2
A
2830 2832Right-handed 310
Helix 75
AI3
A
2833 2839Right-handed alpha
Helix 76
AI4
A
2841 2867Right-handed alpha
Helix 77
AI5
A
2911 2918Right-handed alpha
Helix 78
AI6
A
2925 2940Right-handed alpha
Helix 79
AI7
A
2941 2950Right-handed alpha
Helix 80
AI8
A
3003 3019Right-handed alpha
Helix 81
AI9
A
3027 3041Right-handed alpha
Helix 82
AJ1
A
3041 3047Right-handed alpha
Helix 83
AJ2
A
3049 3053Right-handed 310
Helix 84
AJ3
B
1463 1478Right-handed alpha
Helix 85
AJ4
B
1491 1509Right-handed alpha
Helix 86
AJ5
B
1517 1525Right-handed alpha
Helix 87
AJ6
B
1526 1529Right-handed 310
Helix 88
AJ7
B
1531 1548Right-handed alpha
Helix 89
AJ8
B
1552 1561Right-handed alpha
Helix 90
AJ9
B
1568 1570Right-handed 310
Helix 91
AK1
B
1571 1583Right-handed alpha
Helix 92
AK2
B
1589 1604Right-handed alpha
Helix 93
AK3
B
1606 1609Right-handed 310
Helix 94
AK4
B
1610 1624Right-handed alpha
Helix 95
AK5
B
1627 1635Right-handed alpha
Helix 96
AK6
B
1638 1641Right-handed 310
Helix 97
AK7
B
1642 1658Right-handed alpha
Helix 98
AK8
B
1659 1661Right-handed 310
Helix 99
AK9
B
1663 1677Right-handed alpha
Helix 100
AL1
B
1693 1703Right-handed alpha
Helix 101
AL2
B
1705 1721Right-handed alpha
Helix 102
AL3
B
1726 1742Right-handed alpha
Helix 103
AL4
B
1743 1754Right-handed alpha
Helix 104
AL5
B
1759 1765Right-handed alpha
Helix 105
AL6
B
1766 1768Right-handed 310
Helix 106
AL7
B
1785 1789Right-handed 310
Helix 107
AL8
B
1791 1796Right-handed alpha
Helix 108
AL9
B
1801 1816Right-handed alpha
Helix 109
AM1
B
1827 1832Right-handed alpha
Helix 110
AM2
B
1834 1852Right-handed alpha
Helix 111
AM3
B
1856 1875Right-handed alpha
Helix 112
AM4
B
1902 1918Right-handed alpha
Helix 113
AM5
B
1926 1931Right-handed alpha
Helix 114
AM6
B
1937 1948Right-handed alpha
Helix 115
AM7
B
1950 1974Right-handed alpha
Helix 116
AM8
B
1985 1997Right-handed alpha
Helix 117
AM9
B
2000 2012Right-handed alpha
Helix 118
AN1
B
2028 2039Right-handed alpha
Helix 119
AN2
B
2041 2052Right-handed alpha
Helix 120
AN3
B
2056 2071Right-handed alpha
Helix 121
AN4
B
2074 2088Right-handed alpha
Helix 122
AN5
B
2092 2106Right-handed alpha
Helix 123
AN6
B
2123 2137Right-handed alpha
Helix 124
AN7
B
2139 2161Right-handed alpha
Helix 125
AN8
B
2168 2189Right-handed alpha
Helix 126
AN9
B
2194 2212Right-handed alpha
Helix 127
AO1
B
2216 2237Right-handed alpha
Helix 128
AO2
B
2241 2264Right-handed alpha
Helix 129
AO3
B
2268 2282Right-handed alpha
Helix 130
AO4
B
2290 2302Right-handed alpha
Helix 131
AO5
B
2304 2322Right-handed alpha
Helix 132
AO6
B
2327 2349Right-handed alpha
Helix 133
AO7
B
2352 2371Right-handed alpha
Helix 134
AO8
B
2376 2406Right-handed alpha
Helix 135
AO9
B
2407 2430Right-handed alpha
Helix 136
AP1
B
2435 2476Right-handed alpha
Helix 137
AP2
B
2480 2482Right-handed 310
Helix 138
AP3
B
2483 2494Right-handed alpha
Helix 139
AP4
B
2497 2507Right-handed alpha
Helix 140
AP5
B
2508 2511Right-handed 310
Helix 141
AP6
B
2512 2516Right-handed 310
Helix 142
AP7
B
2519 2525Right-handed alpha
Helix 143
AP8
B
2534 2552Right-handed alpha
Helix 144
AP9
B
2553 2555Right-handed 310
Helix 145
AQ1
B
2556 2565Right-handed alpha
Helix 146
AQ2
B
2567 2573Right-handed alpha
Helix 147
AQ3
B
2592 2613Right-handed alpha
Helix 148
AQ4
B
2613 2633Right-handed alpha
Helix 149
AQ5
B
2635 2639Right-handed 310
Helix 150
AQ6
B
2651 2656Right-handed alpha
Helix 151
AQ7
B
2722 2742Right-handed alpha
Helix 152
AQ8
B
2742 2749Right-handed alpha
Helix 153
AQ9
B
2776 2781Right-handed alpha
Helix 154
AR1
B
2786 2792Right-handed alpha
Helix 155
AR2
B
2797 2809Right-handed alpha
Helix 156
AR3
B
2812 2826Right-handed alpha
Helix 157
AR4
B
2830 2832Right-handed 310
Helix 158
AR5
B
2833 2839Right-handed alpha
Helix 159
AR6
B
2841 2867Right-handed alpha
Helix 160
AR7
B
2911 2917Right-handed alpha
Helix 161
AR8
B
2921 2924Right-handed 310
Helix 162
AR9
B
2925 2940Right-handed alpha
Helix 163
AS1
B
2941 2950Right-handed alpha
Helix 164
AS2
B
3003 3019Right-handed alpha
Helix 165
AS3
B
3027 3041Right-handed alpha
Helix 166
AS4
B
3041 3047Right-handed alpha
Helix 167
AS5
B
3049 3053Right-handed 310
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There are 6 sheets in PDB entry 8OXO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2645 2646first strand
Strand 2
A
2689 2692anti-parallel
Strand 3
A
2700 2706anti-parallel
Strand 4
A
2683 2686anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2645 2646first strand
Strand 2
A
2689 2692anti-parallel
Strand 3
A
2700 2706anti-parallel
Strand 4
A
2711 2718anti-parallel
Strand 5
A
2764 2768anti-parallel
Strand 6
A
2757 2759anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2773 2775first strand
Strand 2
A
2876 2879anti-parallel
Strand 3
A
2885 2887anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2645 2646first strand
Strand 2
B
2689 2692anti-parallel
Strand 3
B
2700 2706anti-parallel
Strand 4
B
2683 2686anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2645 2646first strand
Strand 2
B
2689 2692anti-parallel
Strand 3
B
2700 2706anti-parallel
Strand 4
B
2711 2718anti-parallel
Strand 5
B
2764 2768anti-parallel
Strand 6
B
2757 2759anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2773 2775first strand
Strand 2
B
2876 2879anti-parallel
Strand 3
B
2885 2887anti-parallel
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