Analysis of interatomic Contacts of Structural Units in PDB entry:
8OXU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8OXU entry

There are 4 chains in PDB entry 8OXU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 439ASN 677
B
 LEU 439ASN 677
C
 LEU 439ASP 679
D
 LEU 439ASN 677
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 44 helices in PDB entry 8OXU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
456 464Right-handed alpha
Helix 2
AA2
A
478 484Right-handed alpha
Helix 3
AA3
A
487 494Right-handed alpha
Helix 4
AA4
A
503 514Right-handed alpha
Helix 5
AA5
A
535 547Right-handed alpha
Helix 6
AA6
A
547 559Right-handed alpha
Helix 7
AA7
A
560 562Right-handed 310
Helix 8
AA8
A
586 596Right-handed alpha
Helix 9
AA9
A
619 631Right-handed alpha
Helix 10
AB1
A
636 654Right-handed alpha
Helix 11
AB2
A
660 675Right-handed alpha
Helix 12
AB3
B
456 464Right-handed alpha
Helix 13
AB4
B
478 484Right-handed alpha
Helix 14
AB5
B
487 494Right-handed alpha
Helix 15
AB6
B
503 514Right-handed alpha
Helix 16
AB7
B
533 546Right-handed alpha
Helix 17
AB8
B
547 559Right-handed alpha
Helix 18
AB9
B
560 562Right-handed 310
Helix 19
AC1
B
586 595Right-handed alpha
Helix 20
AC2
B
619 631Right-handed alpha
Helix 21
AC3
B
636 654Right-handed alpha
Helix 22
AC4
B
660 673Right-handed alpha
Helix 23
AC5
B
674 677Right-handed 310
Helix 24
AC6
C
456 464Right-handed alpha
Helix 25
AC7
C
478 484Right-handed alpha
Helix 26
AC8
C
487 493Right-handed alpha
Helix 27
AC9
C
503 514Right-handed alpha
Helix 28
AD1
C
532 547Right-handed alpha
Helix 29
AD2
C
547 559Right-handed alpha
Helix 30
AD3
C
560 562Right-handed 310
Helix 31
AD4
C
586 596Right-handed alpha
Helix 32
AD5
C
619 631Right-handed alpha
Helix 33
AD6
C
636 654Right-handed alpha
Helix 34
AD7
C
660 675Right-handed alpha
Helix 35
AD8
D
456 464Right-handed alpha
Helix 36
AD9
D
478 484Right-handed alpha
Helix 37
AE1
D
487 494Right-handed alpha
Helix 38
AE2
D
503 514Right-handed alpha
Helix 39
AE3
D
532 547Right-handed alpha
Helix 40
AE4
D
547 559Right-handed alpha
Helix 41
AE5
D
586 596Right-handed alpha
Helix 42
AE6
D
619 631Right-handed alpha
Helix 43
AE7
D
636 654Right-handed alpha
Helix 44
AE8
D
660 675Right-handed alpha
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There are 8 sheets in PDB entry 8OXU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
450 455first strand
Strand 2
A
445 447anti-parallel
Strand 3
A
498 501anti-parallel
Strand 4
A
471 475parallel
Strand 5
A
520 522parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
564 567first strand
Strand 2
A
611 615parallel
Strand 3
A
576 580anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
450 455first strand
Strand 2
B
445 447anti-parallel
Strand 3
B
498 501anti-parallel
Strand 4
B
471 475parallel
Strand 5
B
520 522parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
564 567first strand
Strand 2
B
611 615parallel
Strand 3
B
576 580anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
450 455first strand
Strand 2
C
445 447anti-parallel
Strand 3
C
498 501anti-parallel
Strand 4
C
471 475parallel
Strand 5
C
520 522parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
564 567first strand
Strand 2
C
612 615parallel
Strand 3
C
576 579anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
450 455first strand
Strand 2
D
445 447anti-parallel
Strand 3
D
498 501anti-parallel
Strand 4
D
471 475parallel
Strand 5
D
520 522parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
562 567first strand
Strand 2
D
611 615parallel
Strand 3
D
576 579anti-parallel
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