Analysis of interatomic Contacts of Structural Units in PDB entry:
8OXV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8OXV entry

There is 1 chain in PDB entry 8OXV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	GLU 653

There are 26 helices in PDB entry 8OXV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	12	20	Right-handed alpha
Helix 2	AA2	A	148	156	Right-handed alpha
Helix 3	AA3	A	184	194	Right-handed alpha
Helix 4	AA4	A	196	202	Right-handed alpha
Helix 5	AA5	A	202	209	Right-handed alpha
Helix 6	AA6	A	212	224	Right-handed alpha
Helix 7	AA7	A	246	250	Right-handed 310
Helix 8	AA8	A	253	263	Right-handed alpha
Helix 9	AA9	A	272	288	Right-handed alpha
Helix 10	AB1	A	344	348	Right-handed 310
Helix 11	AB2	A	372	377	Right-handed alpha
Helix 12	AB3	A	385	395	Right-handed alpha
Helix 13	AB4	A	436	441	Right-handed alpha
Helix 14	AB5	A	446	460	Right-handed alpha
Helix 15	AB6	A	556	561	Right-handed alpha
Helix 16	AB7	B	28	32	Right-handed 310
Helix 17	AB8	B	62	65	Right-handed 310
Helix 18	AB9	B	87	91	Right-handed 310
Helix 19	AC1	B	165	167	Right-handed 310
Helix 20	AC2	B	196	198	Right-handed 310
Helix 21	AC3	B	210	213	Right-handed 310
Helix 22	AC4	C	28	32	Right-handed 310
Helix 23	AC5	C	82	86	Right-handed 310
Helix 24	AC6	C	125	131	Right-handed alpha
Helix 25	AC7	C	185	192	Right-handed alpha
Helix 26	AC8	C	211	216	Right-handed 310

There are 22 sheets in PDB entry 8OXV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	6	10	first strand
Strand 2	A	38	44	anti-parallel
Strand 3	A	95	101	anti-parallel
Strand 4	A	85	92	anti-parallel
Strand 5	A	71	77	parallel
Strand 6	A	53	60	anti-parallel
Strand 7	A	109	119	anti-parallel
Strand 8	A	122	134	anti-parallel
Strand 9	A	31	33	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	160	167	first strand
Strand 2	A	170	177	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	233	235	first strand
Strand 2	A	268	271	parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	370	371	first strand
Strand 2	A	349	353	anti-parallel
Strand 3	A	326	338	anti-parallel
Strand 4	A	291	301	anti-parallel
Strand 5	A	421	426	anti-parallel
Strand 6	A	433	435	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	319	320	first strand
Strand 2	A	308	313	anti-parallel
Strand 3	A	396	402	parallel
Strand 4	A	409	415	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	360	361	first strand
Strand 2	A	364	365	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	483	489	first strand
Strand 2	A	499	507	anti-parallel
Strand 3	A	548	555	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	530	543	first strand
Strand 2	A	513	524	anti-parallel
Strand 3	A	569	577	anti-parallel
Strand 4	A	584	591	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	597	601	first strand
Strand 2	A	611	618	anti-parallel
Strand 3	A	654	661	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	605	606	first strand
Strand 2	A	680	692	parallel
Strand 3	A	667	677	anti-parallel
Strand 4	A	628	633	anti-parallel
Strand 5	A	642	646	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3	7	first strand
Strand 2	B	18	25	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	68	73	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	12	first strand
Strand 2	B	116	120	parallel
Strand 3	B	92	99	anti-parallel
Strand 4	B	34	39	anti-parallel
Strand 5	B	45	51	anti-parallel
Strand 6	B	58	60	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	12	first strand
Strand 2	B	116	120	parallel
Strand 3	B	92	99	anti-parallel
Strand 4	B	109	112	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	129	133	first strand
Strand 2	B	144	154	anti-parallel
Strand 3	B	185	194	anti-parallel
Strand 4	B	172	174	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	129	133	first strand
Strand 2	B	144	154	anti-parallel
Strand 3	B	185	194	anti-parallel
Strand 4	B	178	179	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	160	163	first strand
Strand 2	B	204	209	anti-parallel
Strand 3	B	214	219	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	4	5	first strand
Strand 2	C	18	24	anti-parallel
Strand 3	C	73	78	anti-parallel
Strand 4	C	63	68	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	9	12	first strand
Strand 2	C	105	109	parallel
Strand 3	C	87	94	anti-parallel
Strand 4	C	35	39	anti-parallel
Strand 5	C	46	49	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	9	12	first strand
Strand 2	C	105	109	parallel
Strand 3	C	87	94	anti-parallel
Strand 4	C	99	101	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	118	122	first strand
Strand 2	C	134	143	anti-parallel
Strand 3	C	176	184	anti-parallel
Strand 4	C	163	165	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	118	122	first strand
Strand 2	C	134	143	anti-parallel
Strand 3	C	176	184	anti-parallel
Strand 4	C	169	170	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	157	159	first strand
Strand 2	C	149	154	anti-parallel
Strand 3	C	195	201	anti-parallel
Strand 4	C	204	210	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8OXV

Analysis of interatomic Contacts of Structural Units in PDB entry:
8OXV