Analysis of interatomic Contacts of Structural Units in PDB entry:
8OXX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8OXX entry

There are 2 chains in PDB entry 8OXX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2LYS 461
B
 GLU 1THR 200
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 8OXX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 20Right-handed alpha
Helix 2
AA2
A
148 156Right-handed alpha
Helix 3
AA3
A
184 194Right-handed alpha
Helix 4
AA4
A
196 209Right-handed alpha
Helix 5
AA5
A
212 224Right-handed alpha
Helix 6
AA6
A
246 250Right-handed 310
Helix 7
AA7
A
253 263Right-handed alpha
Helix 8
AA8
A
272 288Right-handed alpha
Helix 9
AA9
A
344 348Right-handed 310
Helix 10
AB1
A
372 377Right-handed alpha
Helix 11
AB2
A
385 395Right-handed alpha
Helix 12
AB3
A
436 441Right-handed alpha
Helix 13
AB4
A
447 458Right-handed alpha
Helix 14
AB5
B
28 32Right-handed 310
Helix 15
AB6
B
87 91Right-handed 310
Helix 16
AB7
B
165 167Right-handed 310
Helix 17
AB8
B
196 198Right-handed 310
Helix 18
AB9
B
210 213Right-handed 310
Helix 19
AC1
C
28 32Right-handed 310
Helix 20
AC2
C
69 71Right-handed 310
Helix 21
AC3
C
82 86Right-handed 310
Helix 22
AC4
C
125 131Right-handed alpha
Helix 23
AC5
C
185 192Right-handed alpha
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There are 18 sheets in PDB entry 8OXX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 10first strand
Strand 2
A
38 44anti-parallel
Strand 3
A
95 101anti-parallel
Strand 4
A
85 92anti-parallel
Strand 5
A
71 77parallel
Strand 6
A
53 60anti-parallel
Strand 7
A
109 119anti-parallel
Strand 8
A
122 134anti-parallel
Strand 9
A
31 33parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
160 167first strand
Strand 2
A
170 177anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
233 235first strand
Strand 2
A
268 271parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
370 371first strand
Strand 2
A
350 353anti-parallel
Strand 3
A
326 337anti-parallel
Strand 4
A
291 301anti-parallel
Strand 5
A
421 426anti-parallel
Strand 6
A
433 435anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
308 310first strand
Strand 2
A
396 398parallel
Strand 3
A
414 415anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
313 314first strand
Strand 2
A
318 319anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 7first strand
Strand 2
B
18 25anti-parallel
Strand 3
B
78 83anti-parallel
Strand 4
B
68 73anti-parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 12first strand
Strand 2
B
116 120parallel
Strand 3
B
92 99anti-parallel
Strand 4
B
34 39anti-parallel
Strand 5
B
45 51anti-parallel
Strand 6
B
58 60anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 12first strand
Strand 2
B
116 120parallel
Strand 3
B
92 99anti-parallel
Strand 4
B
109 112anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
129 133first strand
Strand 2
B
144 154anti-parallel
Strand 3
B
185 194anti-parallel
Strand 4
B
172 174anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
129 133first strand
Strand 2
B
144 154anti-parallel
Strand 3
B
185 194anti-parallel
Strand 4
B
178 179anti-parallel
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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
160 163first strand
Strand 2
B
204 209anti-parallel
Strand 3
B
214 219anti-parallel
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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
4 5first strand
Strand 2
C
18 24anti-parallel
Strand 3
C
73 78anti-parallel
Strand 4
C
63 68anti-parallel
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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
9 12first strand
Strand 2
C
105 109parallel
Strand 3
C
87 94anti-parallel
Strand 4
C
35 39anti-parallel
Strand 5
C
46 49anti-parallel
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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
9 12first strand
Strand 2
C
105 109parallel
Strand 3
C
87 94anti-parallel
Strand 4
C
99 101anti-parallel
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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
118 122first strand
Strand 2
C
134 143anti-parallel
Strand 3
C
176 184anti-parallel
Strand 4
C
163 165anti-parallel
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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
118 122first strand
Strand 2
C
134 143anti-parallel
Strand 3
C
176 184anti-parallel
Strand 4
C
169 170anti-parallel
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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
157 159first strand
Strand 2
C
149 154anti-parallel
Strand 3
C
195 201anti-parallel
Strand 4
C
204 210anti-parallel
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