Analysis of interatomic Contacts of Structural Units in PDB entry:
8OXZ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8OXZ entry

There are 2 chains in PDB entry 8OXZ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
P	PHE 94	LEU 691
Q	ASN 25	SER 504

There are 20 helices in PDB entry 8OXZ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	P	274	279	Right-handed alpha
Helix 2	AA2	P	286	293	Right-handed alpha
Helix 3	AA3	P	313	317	Right-handed 310
Helix 4	AA4	P	467	471	Right-handed 310
Helix 5	AA5	P	642	646	Right-handed 310
Helix 6	AA6	Q	26	31	Right-handed alpha
Helix 7	AA7	Q	35	40	Right-handed alpha
Helix 8	AA8	Q	59	64	Right-handed 310
Helix 9	AA9	Q	66	74	Right-handed alpha
Helix 10	AB1	Q	152	154	Right-handed 310
Helix 11	AB2	Q	155	163	Right-handed alpha
Helix 12	AB3	Q	165	173	Right-handed alpha
Helix 13	AB4	Q	174	176	Right-handed 310
Helix 14	AB5	Q	228	237	Right-handed alpha
Helix 15	AB6	Q	251	261	Right-handed alpha
Helix 16	AB7	Q	320	328	Right-handed alpha
Helix 17	AB8	Q	338	340	Right-handed 310
Helix 18	AB9	Q	341	352	Right-handed alpha
Helix 19	AC1	Q	366	380	Right-handed alpha
Helix 20	AC2	Q	465	471	Right-handed 310

There are 16 sheets in PDB entry 8OXZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	115	119	first strand
Strand 2	P	127	132	anti-parallel
Strand 3	P	147	151	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	194	198	first strand
Strand 2	P	201	206	anti-parallel
Strand 3	P	224	229	anti-parallel
Strand 4	P	234	238	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	260	262	first strand
Strand 2	P	268	272	anti-parallel
Strand 3	P	281	285	anti-parallel
Strand 4	P	307	308	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	325	328	first strand
Strand 2	P	337	342	anti-parallel
Strand 3	P	351	355	anti-parallel
Strand 4	P	365	367	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	379	382	first strand
Strand 2	P	391	396	anti-parallel
Strand 3	P	413	417	anti-parallel
Strand 4	P	430	433	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	444	448	first strand
Strand 2	P	458	463	anti-parallel
Strand 3	P	473	475	anti-parallel
Strand 4	P	491	492	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	479	480	first strand
Strand 2	P	483	484	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	505	509	first strand
Strand 2	P	524	527	anti-parallel
Strand 3	P	532	535	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	609	611	first strand
Strand 2	P	632	640	anti-parallel
Strand 3	P	571	581	anti-parallel
Strand 4	P	541	551	anti-parallel
Strand 5	P	675	676	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	554	555	first strand
Strand 2	P	683	690	parallel
Strand 3	P	653	661	anti-parallel
Strand 4	P	588	597	anti-parallel
Strand 5	P	618	626	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	562	564	first strand
Strand 2	P	567	569	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	87	92	first strand
Strand 2	Q	116	123	anti-parallel
Strand 3	Q	455	461	parallel
Strand 4	Q	441	448	anti-parallel
Strand 5	Q	382	385	anti-parallel
Strand 6	Q	414	415	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	128	132	first strand
Strand 2	Q	425	431	anti-parallel
Strand 3	Q	394	400	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	220	226	first strand
Strand 2	Q	180	187	anti-parallel
Strand 3	Q	143	150	parallel
Strand 4	Q	271	277	parallel
Strand 5	Q	332	337	parallel
Strand 6	Q	355	359	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	303	304	first strand
Strand 2	Q	307	308	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	483	486	first strand
Strand 2	Q	489	492	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8OXZ

Analysis of interatomic Contacts of Structural Units in PDB entry:
8OXZ