Analysis of interatomic Contacts of Structural Units in PDB entry:
8OY0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8OY0 entry

There are 4 chains in PDB entry 8OY0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 6	ILE 389
B	THR 6	ILE 389
C	GLU 5	ILE 389
D	GLU 5	LEU 202

There are 93 helices in PDB entry 8OY0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	17	37	Right-handed alpha
Helix 2	AA2	A	51	55	Right-handed alpha
Helix 3	AA3	A	87	97	Right-handed alpha
Helix 4	AA4	A	140	158	Right-handed alpha
Helix 5	AA5	A	170	181	Right-handed alpha
Helix 6	AA6	A	183	196	Right-handed alpha
Helix 7	AA7	A	198	208	Right-handed alpha
Helix 8	AA8	A	211	221	Right-handed alpha
Helix 9	AA9	A	224	232	Right-handed alpha
Helix 10	AB1	A	233	239	Right-handed alpha
Helix 11	AB2	A	239	260	Right-handed alpha
Helix 12	AB3	A	304	308	Right-handed 310
Helix 13	AB4	A	320	324	Right-handed alpha
Helix 14	AB5	A	341	354	Right-handed alpha
Helix 15	AB6	A	366	370	Right-handed 310
Helix 16	AB7	B	17	37	Right-handed alpha
Helix 17	AB8	B	51	55	Right-handed alpha
Helix 18	AB9	B	87	97	Right-handed alpha
Helix 19	AC1	B	140	158	Right-handed alpha
Helix 20	AC2	B	170	181	Right-handed alpha
Helix 21	AC3	B	183	196	Right-handed alpha
Helix 22	AC4	B	198	207	Right-handed alpha
Helix 23	AC5	B	211	221	Right-handed alpha
Helix 24	AC6	B	224	232	Right-handed alpha
Helix 25	AC7	B	240	260	Right-handed alpha
Helix 26	AC8	B	304	308	Right-handed 310
Helix 27	AC9	B	320	324	Right-handed alpha
Helix 28	AD1	B	341	354	Right-handed alpha
Helix 29	AD2	B	366	370	Right-handed 310
Helix 30	AD3	C	17	37	Right-handed alpha
Helix 31	AD4	C	51	55	Right-handed alpha
Helix 32	AD5	C	87	97	Right-handed alpha
Helix 33	AD6	C	140	158	Right-handed alpha
Helix 34	AD7	C	170	181	Right-handed alpha
Helix 35	AD8	C	183	196	Right-handed alpha
Helix 36	AD9	C	198	207	Right-handed alpha
Helix 37	AE1	C	211	221	Right-handed alpha
Helix 38	AE2	C	224	232	Right-handed alpha
Helix 39	AE3	C	233	239	Right-handed alpha
Helix 40	AE4	C	239	260	Right-handed alpha
Helix 41	AE5	C	304	308	Right-handed 310
Helix 42	AE6	C	320	324	Right-handed alpha
Helix 43	AE7	C	341	354	Right-handed alpha
Helix 44	AE8	C	366	370	Right-handed 310
Helix 45	AE9	D	17	37	Right-handed alpha
Helix 46	AF1	D	51	55	Right-handed alpha
Helix 47	AF2	D	87	97	Right-handed alpha
Helix 48	AF3	D	140	158	Right-handed alpha
Helix 49	AF4	D	170	181	Right-handed alpha
Helix 50	AF5	D	183	196	Right-handed alpha
Helix 51	AF6	D	198	208	Right-handed alpha
Helix 52	AF7	D	211	221	Right-handed alpha
Helix 53	AF8	D	224	232	Right-handed alpha
Helix 54	AF9	D	233	239	Right-handed alpha
Helix 55	AG1	D	239	260	Right-handed alpha
Helix 56	AG2	D	304	308	Right-handed 310
Helix 57	AG3	D	321	323	Right-handed 310
Helix 58	AG4	D	341	354	Right-handed alpha
Helix 59	AG5	D	366	370	Right-handed 310
Helix 60	AG6	E	30	41	Right-handed alpha
Helix 61	AG7	E	48	52	Right-handed 310
Helix 62	AG8	E	72	80	Right-handed alpha
Helix 63	AG9	E	90	97	Right-handed alpha
Helix 64	AH1	E	135	146	Right-handed alpha
Helix 65	AH2	E	158	162	Right-handed 310
Helix 66	AH3	E	179	184	Right-handed alpha
Helix 67	AH4	E	203	209	Right-handed alpha
Helix 68	AH5	E	209	226	Right-handed alpha
Helix 69	AH6	F	28	41	Right-handed alpha
Helix 70	AH7	F	72	80	Right-handed alpha
Helix 71	AH8	F	90	97	Right-handed alpha
Helix 72	AH9	F	135	146	Right-handed alpha
Helix 73	AI1	F	158	162	Right-handed 310
Helix 74	AI2	F	178	184	Right-handed alpha
Helix 75	AI3	F	203	209	Right-handed alpha
Helix 76	AI4	F	209	225	Right-handed alpha
Helix 77	AI5	G	28	41	Right-handed alpha
Helix 78	AI6	G	72	80	Right-handed alpha
Helix 79	AI7	G	90	97	Right-handed alpha
Helix 80	AI8	G	135	146	Right-handed alpha
Helix 81	AI9	G	158	162	Right-handed 310
Helix 82	AJ1	G	178	184	Right-handed alpha
Helix 83	AJ2	G	203	209	Right-handed alpha
Helix 84	AJ3	G	209	225	Right-handed alpha
Helix 85	AJ4	H	28	41	Right-handed alpha
Helix 86	AJ5	H	48	52	Right-handed 310
Helix 87	AJ6	H	72	80	Right-handed alpha
Helix 88	AJ7	H	90	97	Right-handed alpha
Helix 89	AJ8	H	135	146	Right-handed alpha
Helix 90	AJ9	H	158	162	Right-handed 310
Helix 91	AK1	H	178	184	Right-handed alpha
Helix 92	AK2	H	203	209	Right-handed alpha
Helix 93	AK3	H	209	226	Right-handed alpha

There are 20 sheets in PDB entry 8OY0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	41	42	first strand
Strand 2	A	105	112	parallel
Strand 3	A	128	135	anti-parallel
Strand 4	A	313	319	anti-parallel
Strand 5	A	295	299	anti-parallel
Strand 6	A	281	286	anti-parallel
Strand 7	A	164	169	anti-parallel
Strand 8	A	264	267	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	48	50	first strand
Strand 2	A	80	83	anti-parallel
Strand 3	A	71	73	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	358	360	first strand
Strand 2	A	334	336	parallel
Strand 3	A	375	378	parallel
Strand 4	A	385	388	anti-parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	41	42	first strand
Strand 2	B	105	112	parallel
Strand 3	B	128	135	anti-parallel
Strand 4	B	313	319	anti-parallel
Strand 5	B	295	299	anti-parallel
Strand 6	B	281	286	anti-parallel
Strand 7	B	164	169	anti-parallel
Strand 8	B	264	267	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	48	50	first strand
Strand 2	B	80	83	anti-parallel
Strand 3	B	71	73	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	358	360	first strand
Strand 2	B	334	336	parallel
Strand 3	B	375	377	parallel
Strand 4	B	386	388	anti-parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	41	42	first strand
Strand 2	C	105	112	parallel
Strand 3	C	128	135	anti-parallel
Strand 4	C	313	319	anti-parallel
Strand 5	C	295	299	anti-parallel
Strand 6	C	281	286	anti-parallel
Strand 7	C	164	169	anti-parallel
Strand 8	C	264	267	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	48	50	first strand
Strand 2	C	80	83	anti-parallel
Strand 3	C	71	73	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	358	360	first strand
Strand 2	C	334	336	parallel
Strand 3	C	375	378	parallel
Strand 4	C	385	388	anti-parallel

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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	41	42	first strand
Strand 2	D	105	112	parallel
Strand 3	D	128	135	anti-parallel
Strand 4	D	313	319	anti-parallel
Strand 5	D	295	299	anti-parallel
Strand 6	D	281	286	anti-parallel
Strand 7	D	164	169	anti-parallel
Strand 8	D	264	267	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	48	50	first strand
Strand 2	D	80	83	anti-parallel
Strand 3	D	71	73	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	358	360	first strand
Strand 2	D	334	336	parallel
Strand 3	D	375	380	parallel
Strand 4	D	383	388	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	57	58	first strand
Strand 2	E	64	69	anti-parallel
Strand 3	E	21	26	parallel
Strand 4	E	85	89	parallel
Strand 5	E	197	202	anti-parallel
Strand 6	E	101	106	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	151	154	first strand
Strand 2	E	130	133	parallel
Strand 3	E	170	175	parallel
Strand 4	E	112	119	anti-parallel
Strand 5	E	186	195	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	56	58	first strand
Strand 2	F	64	69	anti-parallel
Strand 3	F	21	26	parallel
Strand 4	F	85	89	parallel
Strand 5	F	197	202	anti-parallel
Strand 6	F	101	106	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	151	154	first strand
Strand 2	F	130	133	parallel
Strand 3	F	170	175	parallel
Strand 4	F	112	119	anti-parallel
Strand 5	F	186	195	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	56	58	first strand
Strand 2	G	64	69	anti-parallel
Strand 3	G	21	26	parallel
Strand 4	G	85	89	parallel
Strand 5	G	197	202	anti-parallel
Strand 6	G	101	106	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	151	154	first strand
Strand 2	G	130	133	parallel
Strand 3	G	170	175	parallel
Strand 4	G	112	118	anti-parallel
Strand 5	G	187	195	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	56	58	first strand
Strand 2	H	64	69	anti-parallel
Strand 3	H	21	26	parallel
Strand 4	H	85	89	parallel
Strand 5	H	197	202	anti-parallel
Strand 6	H	101	106	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	151	154	first strand
Strand 2	H	130	133	parallel
Strand 3	H	170	175	parallel
Strand 4	H	112	119	anti-parallel
Strand 5	H	186	195	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8OY0

Analysis of interatomic Contacts of Structural Units in PDB entry:
8OY0