Analysis of interatomic Contacts of Structural Units in PDB entry:
8OY4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8OY4 entry

There are 8 chains in PDB entry 8OY4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 3ASP 465
B
 MET 3ALA 463
C
 A 1 C 6
C
 C 9 A 14
D
 T 1 A 14
E
 C 3 C 6
E
 C 9 A 14
F
 T 1 G 13
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 50 helices in PDB entry 8OY4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 6Right-handed 310
Helix 2
AA2
A
34 47Right-handed alpha
Helix 3
AA3
A
58 64Right-handed 310
Helix 4
AA4
A
65 86Right-handed alpha
Helix 5
AA5
A
96 109Right-handed alpha
Helix 6
AA6
A
120 132Right-handed alpha
Helix 7
AA7
A
148 153Right-handed alpha
Helix 8
AA8
A
159 170Right-handed alpha
Helix 9
AA9
A
170 175Right-handed alpha
Helix 10
AB1
A
200 212Right-handed alpha
Helix 11
AB2
A
213 215Right-handed 310
Helix 12
AB3
A
233 248Right-handed alpha
Helix 13
AB4
A
251 256Right-handed alpha
Helix 14
AB5
A
267 273Right-handed alpha
Helix 15
AB6
A
277 288Right-handed alpha
Helix 16
AB7
A
291 303Right-handed alpha
Helix 17
AB8
A
303 316Right-handed alpha
Helix 18
AB9
A
321 325Right-handed 310
Helix 19
AC1
A
326 336Right-handed alpha
Helix 20
AC2
A
346 352Right-handed alpha
Helix 21
AC3
A
357 371Right-handed alpha
Helix 22
AC4
A
374 388Right-handed alpha
Helix 23
AC5
A
391 407Right-handed alpha
Helix 24
AC6
A
412 425Right-handed alpha
Helix 25
AC7
A
444 450Right-handed alpha
Helix 26
AC8
A
453 461Right-handed alpha
Helix 27
AC9
B
4 6Right-handed 310
Helix 28
AD1
B
34 48Right-handed alpha
Helix 29
AD2
B
58 62Right-handed 310
Helix 30
AD3
B
65 86Right-handed alpha
Helix 31
AD4
B
96 108Right-handed alpha
Helix 32
AD5
B
120 132Right-handed alpha
Helix 33
AD6
B
148 153Right-handed alpha
Helix 34
AD7
B
159 170Right-handed alpha
Helix 35
AD8
B
170 175Right-handed alpha
Helix 36
AD9
B
233 248Right-handed alpha
Helix 37
AE1
B
248 256Right-handed alpha
Helix 38
AE2
B
267 274Right-handed alpha
Helix 39
AE3
B
277 287Right-handed alpha
Helix 40
AE4
B
292 303Right-handed alpha
Helix 41
AE5
B
303 313Right-handed alpha
Helix 42
AE6
B
321 325Right-handed 310
Helix 43
AE7
B
326 336Right-handed alpha
Helix 44
AE8
B
346 351Right-handed alpha
Helix 45
AE9
B
357 371Right-handed alpha
Helix 46
AF1
B
374 388Right-handed alpha
Helix 47
AF2
B
391 407Right-handed alpha
Helix 48
AF3
B
412 425Right-handed alpha
Helix 49
AF4
B
444 452Right-handed alpha
Helix 50
AF5
B
453 461Right-handed alpha
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There are 2 sheets in PDB entry 8OY4. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
8 12first strand
Strand 2
A
138 141anti-parallel
Strand 3
A
112 116parallel
Strand 4
A
21 25parallel
Strand 5
A
51 56parallel
Strand 6
A
90 93parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
8 12first strand
Strand 2
B
138 141anti-parallel
Strand 3
B
112 116parallel
Strand 4
B
21 25parallel
Strand 5
B
51 57parallel
Strand 6
B
90 94parallel
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