Analysis of interatomic Contacts of Structural Units in PDB entry:
8OYA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8OYA entry

There are 6 chains in PDB entry 8OYA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 3ALA 468
B
 ARG 7SER 462
C
 A 1 A 14
D
 T 1 A 14
E
 G 4 A 14
F
 T 1 G 13
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 48 helices in PDB entry 8OYA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 6Right-handed 310
Helix 2
AA2
A
34 47Right-handed alpha
Helix 3
AA3
A
59 64Right-handed 310
Helix 4
AA4
A
65 85Right-handed alpha
Helix 5
AA5
A
96 108Right-handed alpha
Helix 6
AA6
A
120 133Right-handed alpha
Helix 7
AA7
A
148 153Right-handed alpha
Helix 8
AA8
A
159 169Right-handed alpha
Helix 9
AA9
A
170 175Right-handed alpha
Helix 10
AB1
A
200 212Right-handed alpha
Helix 11
AB2
A
213 215Right-handed 310
Helix 12
AB3
A
233 248Right-handed alpha
Helix 13
AB4
A
251 256Right-handed alpha
Helix 14
AB5
A
267 274Right-handed alpha
Helix 15
AB6
A
277 288Right-handed alpha
Helix 16
AB7
A
291 303Right-handed alpha
Helix 17
AB8
A
303 316Right-handed alpha
Helix 18
AB9
A
321 325Right-handed 310
Helix 19
AC1
A
326 335Right-handed alpha
Helix 20
AC2
A
346 352Right-handed alpha
Helix 21
AC3
A
357 371Right-handed alpha
Helix 22
AC4
A
374 388Right-handed alpha
Helix 23
AC5
A
391 407Right-handed alpha
Helix 24
AC6
A
412 425Right-handed alpha
Helix 25
AC7
A
444 452Right-handed alpha
Helix 26
AC8
A
453 462Right-handed alpha
Helix 27
AC9
B
34 48Right-handed alpha
Helix 28
AD1
B
58 64Right-handed 310
Helix 29
AD2
B
66 84Right-handed alpha
Helix 30
AD3
B
101 108Right-handed alpha
Helix 31
AD4
B
120 133Right-handed alpha
Helix 32
AD5
B
148 153Right-handed alpha
Helix 33
AD6
B
159 170Right-handed alpha
Helix 34
AD7
B
170 175Right-handed alpha
Helix 35
AD8
B
233 248Right-handed alpha
Helix 36
AD9
B
248 256Right-handed alpha
Helix 37
AE1
B
267 273Right-handed alpha
Helix 38
AE2
B
277 287Right-handed alpha
Helix 39
AE3
B
291 315Right-handed alpha
Helix 40
AE4
B
321 325Right-handed 310
Helix 41
AE5
B
326 335Right-handed alpha
Helix 42
AE6
B
346 352Right-handed alpha
Helix 43
AE7
B
357 371Right-handed alpha
Helix 44
AE8
B
374 388Right-handed alpha
Helix 45
AE9
B
391 407Right-handed alpha
Helix 46
AF1
B
412 425Right-handed alpha
Helix 47
AF2
B
444 450Right-handed alpha
Helix 48
AF3
B
453 461Right-handed alpha
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There are 2 sheets in PDB entry 8OYA. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
8 12first strand
Strand 2
A
138 141anti-parallel
Strand 3
A
112 116parallel
Strand 4
A
21 24parallel
Strand 5
A
51 57parallel
Strand 6
A
90 94parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
8 12first strand
Strand 2
B
138 141anti-parallel
Strand 3
B
112 115parallel
Strand 4
B
21 25parallel
Strand 5
B
51 57parallel
Strand 6
B
90 94parallel
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