Analysis of interatomic Contacts of Structural Units in PDB entry:
8OYE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8OYE entry

There is 1 chain in PDB entry 8OYE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 47ASN 609
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 8OYE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
60 64Right-handed 310
Helix 2
AA2
A
71 75Right-handed 310
Helix 3
AA3
A
101 107Right-handed alpha
Helix 4
AA4
A
131 142Right-handed alpha
Helix 5
AA5
A
161 166Right-handed alpha
Helix 6
AA6
A
168 187Right-handed alpha
Helix 7
AA7
A
206 208Right-handed 310
Helix 8
AA8
A
209 214Right-handed alpha
Helix 9
AA9
A
215 217Right-handed 310
Helix 10
AB1
A
219 243Right-handed alpha
Helix 11
AB2
A
255 260Right-handed alpha
Helix 12
AB3
A
265 271Right-handed 310
Helix 13
AB4
A
301 305Right-handed 310
Helix 14
AB5
A
313 322Right-handed alpha
Helix 15
AB6
A
326 328Right-handed 310
Helix 16
AB7
A
360 364Right-handed 310
Helix 17
AB8
A
383 394Right-handed alpha
Helix 18
AB9
A
423 438Right-handed alpha
Helix 19
AC1
A
446 450Right-handed 310
Helix 20
AC2
A
473 487Right-handed alpha
Helix 21
AC3
A
495 500Right-handed 310
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There are 7 sheets in PDB entry 8OYE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
97 99first strand
Strand 2
A
82 90anti-parallel
Strand 3
A
148 154parallel
Strand 4
A
190 194parallel
Strand 5
A
247 252parallel
Strand 6
A
273 276parallel
Strand 7
A
330 335parallel
Strand 8
A
441 445parallel
Strand 9
A
52 58parallel
Strand 10
A
82 90parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
116 117first strand
Strand 2
A
120 121anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
357 358first strand
Strand 2
A
340 342anti-parallel
Strand 3
A
417 420anti-parallel
Strand 4
A
407 412anti-parallel
Strand 5
A
397 402anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
452 453first strand
Strand 2
A
469 470anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
502 503first strand
Strand 2
A
605 606parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
505 514first strand
Strand 2
A
517 526anti-parallel
Strand 3
A
582 590anti-parallel
Strand 4
A
547 551anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
555 561first strand
Strand 2
A
564 570anti-parallel
Strand 3
A
537 543anti-parallel
Strand 4
A
597 601anti-parallel
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