Analysis of interatomic Contacts of Structural Units in PDB entry:
8OYP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8OYP entry

There are 6 chains in PDB entry 8OYP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PHE 302	ASN 340
A	TYR 342	LEU 936
B	LYS 303	ASN 340
B	TYR 342	HIS 941
C	MET 1	GLY 79
D	MET 1	GLY 79

There are 43 helices in PDB entry 8OYP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	317	329	Right-handed alpha
Helix 2	AA2	A	330	339	Right-handed alpha
Helix 3	AA3	A	340	346	Right-handed 310
Helix 4	AA4	A	356	370	Right-handed alpha
Helix 5	AA5	A	379	390	Right-handed alpha
Helix 6	AA6	A	391	394	Right-handed 310
Helix 7	AA7	A	401	416	Right-handed alpha
Helix 8	AA8	A	434	448	Right-handed alpha
Helix 9	AA9	A	452	459	Right-handed alpha
Helix 10	AB1	A	500	513	Right-handed alpha
Helix 11	AB2	A	523	535	Right-handed alpha
Helix 12	AB3	A	550	561	Right-handed alpha
Helix 13	AB4	A	574	576	Right-handed 310
Helix 14	AB5	A	577	585	Right-handed alpha
Helix 15	AB6	A	597	610	Right-handed alpha
Helix 16	AB7	A	781	789	Right-handed alpha
Helix 17	AB8	A	854	859	Right-handed alpha
Helix 18	AB9	A	866	869	Right-handed 310
Helix 19	AC1	A	913	917	Right-handed 310
Helix 20	AC2	A	930	935	Right-handed alpha
Helix 21	AC3	B	317	329	Right-handed alpha
Helix 22	AC4	B	330	339	Right-handed alpha
Helix 23	AC5	B	356	370	Right-handed alpha
Helix 24	AC6	B	379	390	Right-handed alpha
Helix 25	AC7	B	391	394	Right-handed 310
Helix 26	AC8	B	401	416	Right-handed alpha
Helix 27	AC9	B	434	450	Right-handed alpha
Helix 28	AD1	B	452	459	Right-handed alpha
Helix 29	AD2	B	500	512	Right-handed alpha
Helix 30	AD3	B	523	535	Right-handed alpha
Helix 31	AD4	B	551	561	Right-handed alpha
Helix 32	AD5	B	563	567	Right-handed 310
Helix 33	AD6	B	578	586	Right-handed alpha
Helix 34	AD7	B	597	610	Right-handed alpha
Helix 35	AD8	B	781	789	Right-handed alpha
Helix 36	AD9	B	866	869	Right-handed 310
Helix 37	AE1	B	913	917	Right-handed 310
Helix 38	AE2	B	930	936	Right-handed alpha
Helix 39	AE3	B	937	939	Right-handed 310
Helix 40	AE4	C	22	35	Right-handed alpha
Helix 41	AE5	C	37	41	Right-handed 310
Helix 42	AE6	D	22	35	Right-handed alpha
Helix 43	AE7	D	56	60	Right-handed 310

There are 21 sheets in PDB entry 8OYP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	310	311	first strand
Strand 2	A	376	377	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	399	400	first strand
Strand 2	C	74	75	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	474	481	first strand
Strand 2	A	460	467	anti-parallel
Strand 3	A	812	819	anti-parallel
Strand 4	A	791	793	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	483	486	first strand
Strand 2	A	823	828	parallel
Strand 3	A	922	929	anti-parallel
Strand 4	A	871	882	anti-parallel
Strand 5	A	852	853	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	483	486	first strand
Strand 2	A	823	828	parallel
Strand 3	A	922	929	anti-parallel
Strand 4	A	871	882	anti-parallel
Strand 5	A	887	894	anti-parallel
Strand 6	A	901	905	anti-parallel
Strand 7	A	908	912	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	517	521	first strand
Strand 2	A	493	497	parallel
Strand 3	A	538	542	parallel
Strand 4	A	569	573	parallel
Strand 5	A	590	593	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	779	780	first strand
Strand 2	A	845	846	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	800	802	first strand
Strand 2	A	807	809	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	831	833	first strand
Strand 2	A	838	840	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	310	311	first strand
Strand 2	B	376	377	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	399	400	first strand
Strand 2	D	74	75	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	474	481	first strand
Strand 2	B	460	467	anti-parallel
Strand 3	B	812	819	anti-parallel
Strand 4	B	792	793	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	483	487	first strand
Strand 2	B	823	829	parallel
Strand 3	B	922	929	anti-parallel
Strand 4	B	871	882	anti-parallel
Strand 5	B	852	853	anti-parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	483	487	first strand
Strand 2	B	823	829	parallel
Strand 3	B	922	929	anti-parallel
Strand 4	B	871	882	anti-parallel
Strand 5	B	887	894	anti-parallel
Strand 6	B	901	905	anti-parallel
Strand 7	B	908	912	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	517	521	first strand
Strand 2	B	493	497	parallel
Strand 3	B	538	542	parallel
Strand 4	B	569	573	parallel
Strand 5	B	590	593	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	544	545	first strand
Strand 2	B	549	550	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	779	780	first strand
Strand 2	B	845	846	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	800	802	first strand
Strand 2	B	807	809	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	831	833	first strand
Strand 2	B	838	840	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	12	16	first strand
Strand 2	C	2	6	anti-parallel
Strand 3	C	66	70	parallel
Strand 4	C	42	45	anti-parallel
Strand 5	C	48	49	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	12	16	first strand
Strand 2	D	2	6	anti-parallel
Strand 3	D	66	70	parallel
Strand 4	D	42	45	anti-parallel
Strand 5	D	48	49	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8OYP

Analysis of interatomic Contacts of Structural Units in PDB entry:
8OYP