Analysis of interatomic Contacts of Structural Units in PDB entry:
8OZD

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8OZD entry

There are 8 chains in PDB entry 8OZD (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ILE 418
B	MET 1	ILE 507
I	U 1	U 18
F	U 19	U 36
J	A 1	A 16
E	A 17	A 32
C	MET 1	ILE 418
D	MET 1	ILE 507

There are 66 helices in PDB entry 8OZD. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	14	29	Right-handed alpha
Helix 2	AA2	A	44	56	Right-handed alpha
Helix 3	AA3	A	71	89	Right-handed alpha
Helix 4	AA4	A	109	114	Right-handed alpha
Helix 5	AA5	A	123	138	Right-handed alpha
Helix 6	AA6	A	147	157	Right-handed alpha
Helix 7	AA7	A	191	194	Right-handed 310
Helix 8	AA8	A	219	224	Right-handed 310
Helix 9	AA9	A	227	233	Right-handed 310
Helix 10	AB1	A	234	238	Right-handed 310
Helix 11	AB2	A	242	249	Right-handed alpha
Helix 12	AB3	A	257	280	Right-handed alpha
Helix 13	AB4	A	300	302	Right-handed 310
Helix 14	AB5	A	353	367	Right-handed alpha
Helix 15	AB6	A	369	384	Right-handed alpha
Helix 16	AB7	B	15	17	Right-handed 310
Helix 17	AB8	B	22	31	Right-handed alpha
Helix 18	AB9	B	46	61	Right-handed alpha
Helix 19	AC1	B	77	83	Right-handed alpha
Helix 20	AC2	B	97	106	Right-handed alpha
Helix 21	AC3	B	109	132	Right-handed alpha
Helix 22	AC4	B	144	150	Right-handed alpha
Helix 23	AC5	B	158	162	Right-handed 310
Helix 24	AC6	B	205	214	Right-handed alpha
Helix 25	AC7	B	230	234	Right-handed 310
Helix 26	AC8	B	245	247	Right-handed 310
Helix 27	AC9	B	248	264	Right-handed alpha
Helix 28	AD1	B	331	351	Right-handed alpha
Helix 29	AD2	B	366	377	Right-handed alpha
Helix 30	AD3	B	426	430	Right-handed 310
Helix 31	AD4	B	451	463	Right-handed alpha
Helix 32	AD5	B	477	491	Right-handed alpha
Helix 33	AD6	B	502	506	Right-handed 310
Helix 34	AD7	C	14	29	Right-handed alpha
Helix 35	AD8	C	44	56	Right-handed alpha
Helix 36	AD9	C	71	89	Right-handed alpha
Helix 37	AE1	C	109	114	Right-handed alpha
Helix 38	AE2	C	123	138	Right-handed alpha
Helix 39	AE3	C	147	157	Right-handed alpha
Helix 40	AE4	C	191	194	Right-handed 310
Helix 41	AE5	C	219	224	Right-handed 310
Helix 42	AE6	C	227	233	Right-handed 310
Helix 43	AE7	C	234	238	Right-handed 310
Helix 44	AE8	C	242	249	Right-handed alpha
Helix 45	AE9	C	257	280	Right-handed alpha
Helix 46	AF1	C	300	302	Right-handed 310
Helix 47	AF2	C	353	367	Right-handed alpha
Helix 48	AF3	C	369	384	Right-handed alpha
Helix 49	AF4	D	15	17	Right-handed 310
Helix 50	AF5	D	22	31	Right-handed alpha
Helix 51	AF6	D	46	61	Right-handed alpha
Helix 52	AF7	D	77	83	Right-handed alpha
Helix 53	AF8	D	97	106	Right-handed alpha
Helix 54	AF9	D	109	132	Right-handed alpha
Helix 55	AG1	D	144	150	Right-handed alpha
Helix 56	AG2	D	158	162	Right-handed 310
Helix 57	AG3	D	205	214	Right-handed alpha
Helix 58	AG4	D	230	234	Right-handed 310
Helix 59	AG5	D	245	247	Right-handed 310
Helix 60	AG6	D	248	264	Right-handed alpha
Helix 61	AG7	D	331	351	Right-handed alpha
Helix 62	AG8	D	366	377	Right-handed alpha
Helix 63	AG9	D	426	430	Right-handed 310
Helix 64	AH1	D	451	463	Right-handed alpha
Helix 65	AH2	D	477	491	Right-handed alpha
Helix 66	AH3	D	502	506	Right-handed 310

There are 20 sheets in PDB entry 8OZD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	32	33	first strand
Strand 2	A	4	8	parallel
Strand 3	A	57	64	parallel
Strand 4	A	94	98	parallel
Strand 5	A	118	119	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	278	279	first strand
Strand 2	B	356	361	parallel
Strand 3	B	282	286	parallel
Strand 4	B	297	305	anti-parallel
Strand 5	B	311	315	anti-parallel

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There are 10 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	278	279	first strand
Strand 2	B	356	361	parallel
Strand 3	B	382	389	parallel
Strand 4	B	441	447	anti-parallel
Strand 5	B	417	420	anti-parallel
Strand 6	B	409	412	anti-parallel
Strand 7	B	3	6	anti-parallel
Strand 8	A	410	415	parallel
Strand 9	A	165	173	anti-parallel
Strand 10	B	396	398	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	176	180	first strand
Strand 2	A	400	407	anti-parallel
Strand 3	A	390	394	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	186	189	first strand
Strand 2	A	213	216	anti-parallel
Strand 3	A	208	210	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	283	286	first strand
Strand 2	A	291	294	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	304	305	first strand
Strand 2	A	308	309	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	311	314	first strand
Strand 2	A	317	328	anti-parallel
Strand 3	A	334	344	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	19	20	first strand
Strand 2	B	12	13	anti-parallel
Strand 3	B	270	271	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	92	95	first strand
Strand 2	B	41	45	parallel
Strand 3	B	138	143	parallel
Strand 4	B	221	225	parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	32	33	first strand
Strand 2	C	4	8	parallel
Strand 3	C	57	64	parallel
Strand 4	C	94	98	parallel
Strand 5	C	118	119	parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	278	279	first strand
Strand 2	D	356	361	parallel
Strand 3	D	282	286	parallel
Strand 4	D	297	305	anti-parallel
Strand 5	D	311	315	anti-parallel

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There are 10 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	278	279	first strand
Strand 2	D	356	361	parallel
Strand 3	D	382	389	parallel
Strand 4	D	441	447	anti-parallel
Strand 5	D	417	420	anti-parallel
Strand 6	D	409	412	anti-parallel
Strand 7	D	3	6	anti-parallel
Strand 8	C	410	415	parallel
Strand 9	C	165	173	anti-parallel
Strand 10	D	396	398	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	176	180	first strand
Strand 2	C	400	407	anti-parallel
Strand 3	C	390	394	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	186	189	first strand
Strand 2	C	213	216	anti-parallel
Strand 3	C	208	210	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	283	286	first strand
Strand 2	C	291	294	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	304	305	first strand
Strand 2	C	308	309	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	311	314	first strand
Strand 2	C	317	328	anti-parallel
Strand 3	C	334	344	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	19	20	first strand
Strand 2	D	12	13	anti-parallel
Strand 3	D	270	271	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	92	95	first strand
Strand 2	D	41	45	parallel
Strand 3	D	138	143	parallel
Strand 4	D	221	225	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8OZD

Analysis of interatomic Contacts of Structural Units in PDB entry:
8OZD