Analysis of interatomic Contacts of Structural Units in PDB entry:
8P0A


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8P0A entry

There are 3 chains in PDB entry 8P0A (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 2ASN 1227
B
 MET 1THR 1215
C
 SER 578PRO 626
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 27 helices in PDB entry 8P0A. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
37 48Right-handed alpha
Helix 2
AA2
A
67 71Right-handed 310
Helix 3
AA3
A
113 123Right-handed alpha
Helix 4
AA4
A
138 144Right-handed alpha
Helix 5
AA5
A
147 159Right-handed alpha
Helix 6
AA6
A
161 167Right-handed 310
Helix 7
AA7
A
168 174Right-handed alpha
Helix 8
AA8
A
1051 1057Right-handed alpha
Helix 9
AA9
A
1059 1090Right-handed alpha
Helix 10
AB1
A
1124 1128Right-handed 310
Helix 11
AB2
A
1129 1142Right-handed alpha
Helix 12
AB3
A
1163 1178Right-handed alpha
Helix 13
AB4
A
1190 1196Right-handed alpha
Helix 14
AB5
B
38 46Right-handed alpha
Helix 15
AB6
B
59 64Right-handed alpha
Helix 16
AB7
B
117 120Right-handed 310
Helix 17
AB8
B
121 128Right-handed alpha
Helix 18
AB9
B
151 162Right-handed alpha
Helix 19
AC1
B
1033 1048Right-handed alpha
Helix 20
AC2
B
1111 1115Right-handed 310
Helix 21
AC3
B
1118 1135Right-handed alpha
Helix 22
AC4
B
1150 1163Right-handed alpha
Helix 23
AC5
B
1178 1183Right-handed 310
Helix 24
AC6
B
1202 1212Right-handed alpha
Helix 25
AC7
C
581 585Right-handed 310
Helix 26
AC8
C
589 603Right-handed alpha
Helix 27
AC9
C
604 607Right-handed 310
Back to top of page

There are 8 sheets in PDB entry 8P0A. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 10first strand
Strand 2
A
78 85anti-parallel
Strand 3
A
92 99anti-parallel
Strand 4
A
102 107anti-parallel
Strand 5
A
111 112anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 30first strand
Strand 2
A
1183 1187parallel
Strand 3
A
1152 1156parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1095 1100first strand
Strand 2
A
1111 1116anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1202 1206first strand
Strand 2
A
1212 1216anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
5 9first strand
Strand 2
B
76 81anti-parallel
Strand 3
B
97 102anti-parallel
Strand 4
B
107 111anti-parallel
Strand 5
B
115 116anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1139 1143first strand
Strand 2
B
1169 1173parallel
Strand 3
B
27 32parallel
Strand 4
B
1187 1192parallel
Strand 5
B
1195 1199anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1054 1057first strand
Strand 2
B
1096 1099anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
609 610first strand
Strand 2
C
623 624anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il