Analysis of interatomic Contacts of Structural Units in PDB entry:
8P0B

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8P0B entry

There are 5 chains in PDB entry 8P0B (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 3	TYR 622
B	MET 1	ARG 636
C	ASP 50	GLY 144
R	U 27	U 32
V	A 1	G 12

There are 51 helices in PDB entry 8P0B. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	10	20	Right-handed alpha
Helix 2	AA2	A	21	25	Right-handed 310
Helix 3	AA3	A	29	48	Right-handed alpha
Helix 4	AA4	A	64	75	Right-handed alpha
Helix 5	AA5	A	135	155	Right-handed alpha
Helix 6	AA6	A	157	167	Right-handed alpha
Helix 7	AA7	A	177	184	Right-handed alpha
Helix 8	AA8	A	246	257	Right-handed alpha
Helix 9	AA9	A	270	272	Right-handed 310
Helix 10	AB1	A	273	286	Right-handed alpha
Helix 11	AB2	A	296	301	Right-handed alpha
Helix 12	AB3	A	304	315	Right-handed alpha
Helix 13	AB4	A	335	345	Right-handed alpha
Helix 14	AB5	A	362	380	Right-handed alpha
Helix 15	AB6	A	382	400	Right-handed alpha
Helix 16	AB7	A	485	492	Right-handed alpha
Helix 17	AB8	A	493	497	Right-handed 310
Helix 18	AB9	A	498	517	Right-handed alpha
Helix 19	AC1	A	540	557	Right-handed alpha
Helix 20	AC2	A	559	581	Right-handed alpha
Helix 21	AC3	A	592	599	Right-handed alpha
Helix 22	AC4	A	604	617	Right-handed alpha
Helix 23	AC5	B	1	5	Right-handed 310
Helix 24	AC6	B	13	19	Right-handed 310
Helix 25	AC7	B	33	49	Right-handed alpha
Helix 26	AC8	B	53	58	Right-handed alpha
Helix 27	AC9	B	66	70	Right-handed 310
Helix 28	AD1	B	80	95	Right-handed alpha
Helix 29	AD2	B	95	108	Right-handed alpha
Helix 30	AD3	B	108	113	Right-handed alpha
Helix 31	AD4	B	114	120	Right-handed 310
Helix 32	AD5	B	134	151	Right-handed alpha
Helix 33	AD6	B	157	169	Right-handed alpha
Helix 34	AD7	B	216	224	Right-handed alpha
Helix 35	AD8	B	250	266	Right-handed alpha
Helix 36	AD9	B	276	287	Right-handed alpha
Helix 37	AE1	B	310	325	Right-handed alpha
Helix 38	AE2	B	328	344	Right-handed alpha
Helix 39	AE3	B	373	378	Right-handed 310
Helix 40	AE4	B	396	408	Right-handed alpha
Helix 41	AE5	B	432	451	Right-handed alpha
Helix 42	AE6	B	456	459	Right-handed 310
Helix 43	AE7	B	496	514	Right-handed alpha
Helix 44	AE8	B	518	537	Right-handed alpha
Helix 45	AE9	B	543	552	Right-handed alpha
Helix 46	AF1	B	558	562	Right-handed 310
Helix 47	AF2	B	575	583	Right-handed alpha
Helix 48	AF3	B	587	595	Right-handed alpha
Helix 49	AF4	C	51	62	Right-handed alpha
Helix 50	AF5	C	102	111	Right-handed alpha
Helix 51	AF6	C	115	136	Right-handed alpha

There are 14 sheets in PDB entry 8P0B. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	87	89	first strand
Strand 2	A	94	96	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	98	101	first strand
Strand 2	A	117	120	parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	210	211	first strand
Strand 2	A	584	587	anti-parallel
Strand 3	B	460	463	anti-parallel
Strand 4	B	294	303	anti-parallel
Strand 5	B	423	430	anti-parallel
Strand 6	B	416	420	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	210	211	first strand
Strand 2	A	584	587	anti-parallel
Strand 3	B	460	463	anti-parallel
Strand 4	B	294	303	anti-parallel
Strand 5	B	453	454	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	237	238	first strand
Strand 2	A	442	451	anti-parallel
Strand 3	A	423	431	anti-parallel
Strand 4	A	472	484	first strand
Strand 5	A	463	469	anti-parallel
Strand 6	A	259	264	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	240	242	first strand
Strand 2	A	423	431	anti-parallel
Strand 3	A	442	451	anti-parallel
Strand 4	A	410	417	first strand

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	322	323	first strand
Strand 2	B	353	356	anti-parallel
Strand 3	B	362	364	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	526	527	first strand
Strand 2	A	538	539	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	124	125	first strand
Strand 2	B	132	133	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	173	177	first strand
Strand 2	B	211	215	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	242	245	first strand
Strand 2	B	225	230	anti-parallel
Strand 3	B	345	348	parallel
Strand 4	B	384	387	anti-parallel
Strand 5	B	380	381	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	467	470	first strand
Strand 2	B	473	476	anti-parallel
Strand 3	B	479	482	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	633	634	first strand
Strand 2	C	67	69	anti-parallel
Strand 3	C	97	99	anti-parallel
Strand 4	C	85	86	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	78	79	first strand
Strand 2	C	82	83	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8P0B

Analysis of interatomic Contacts of Structural Units in PDB entry:
8P0B