Analysis of interatomic Contacts of Structural Units in PDB entry:
8P0C


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8P0C entry

There are 2 chains in PDB entry 8P0C (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 3HIS 186
B
 ALA 2HIS 187
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 8P0C. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
46 55Right-handed alpha
Helix 2
AA2
A
57 68Right-handed alpha
Helix 3
AA3
A
101 125Right-handed alpha
Helix 4
AA4
A
142 154Right-handed alpha
Helix 5
AA5
A
170 186Right-handed alpha
Helix 6
AA6
B
46 55Right-handed alpha
Helix 7
AA7
B
58 68Right-handed alpha
Helix 8
AA8
B
99 101Right-handed 310
Helix 9
AA9
B
102 125Right-handed alpha
Helix 10
AB1
B
142 154Right-handed alpha
Helix 11
AB2
B
170 186Right-handed alpha
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There are 3 sheets in PDB entry 8P0C. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 10first strand
Strand 2
A
17 21anti-parallel
Strand 3
A
163 168parallel
Strand 4
A
128 131parallel
Strand 5
A
33 38parallel
Strand 6
A
87 92parallel
Strand 7
A
75 79anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
6 10first strand
Strand 2
B
17 21anti-parallel
Strand 3
B
163 168parallel
Strand 4
B
128 131parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
33 38first strand
Strand 2
B
87 92parallel
Strand 3
B
75 79anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il