Analysis of interatomic Contacts of Structural Units in PDB entry:
8P0I

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8P0I entry

There are 2 chains in PDB entry 8P0I (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 160	LEU 1025
B	PHE 161	LEU 1025

There are 72 helices in PDB entry 8P0I. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	340	342	Right-handed 310
Helix 2	AA2	A	355	359	Right-handed 310
Helix 3	AA3	A	391	409	Right-handed alpha
Helix 4	AA4	A	451	469	Right-handed alpha
Helix 5	AA5	A	479	481	Right-handed 310
Helix 6	AA6	A	482	501	Right-handed alpha
Helix 7	AA7	A	502	506	Right-handed 310
Helix 8	AA8	A	507	523	Right-handed alpha
Helix 9	AA9	A	536	543	Right-handed alpha
Helix 10	AB1	A	545	563	Right-handed alpha
Helix 11	AB2	A	564	580	Right-handed alpha
Helix 12	AB3	A	585	597	Right-handed alpha
Helix 13	AB4	A	604	612	Right-handed alpha
Helix 14	AB5	A	694	697	Right-handed 310
Helix 15	AB6	A	705	719	Right-handed alpha
Helix 16	AB7	A	720	723	Right-handed 310
Helix 17	AB8	A	724	740	Right-handed alpha
Helix 18	AB9	A	746	754	Right-handed alpha
Helix 19	AC1	A	755	759	Right-handed 310
Helix 20	AC2	A	761	783	Right-handed alpha
Helix 21	AC3	A	784	806	Right-handed alpha
Helix 22	AC4	A	813	830	Right-handed alpha
Helix 23	AC5	A	834	849	Right-handed alpha
Helix 24	AC6	A	856	858	Right-handed 310
Helix 25	AC7	A	859	869	Right-handed alpha
Helix 26	AC8	A	870	882	Right-handed alpha
Helix 27	AC9	A	886	898	Right-handed alpha
Helix 28	AD1	A	902	916	Right-handed alpha
Helix 29	AD2	A	920	922	Right-handed 310
Helix 30	AD3	A	923	934	Right-handed alpha
Helix 31	AD4	A	937	948	Right-handed alpha
Helix 32	AD5	A	948	955	Right-handed alpha
Helix 33	AD6	A	960	970	Right-handed alpha
Helix 34	AD7	A	976	991	Right-handed alpha
Helix 35	AD8	A	991	996	Right-handed alpha
Helix 36	AD9	A	997	1023	Right-handed alpha
Helix 37	AE1	B	298	302	Right-handed 310
Helix 38	AE2	B	355	359	Right-handed 310
Helix 39	AE3	B	387	389	Right-handed 310
Helix 40	AE4	B	390	409	Right-handed alpha
Helix 41	AE5	B	451	471	Right-handed alpha
Helix 42	AE6	B	479	482	Right-handed 310
Helix 43	AE7	B	483	502	Right-handed alpha
Helix 44	AE8	B	503	505	Right-handed 310
Helix 45	AE9	B	506	524	Right-handed alpha
Helix 46	AF1	B	538	543	Right-handed alpha
Helix 47	AF2	B	545	563	Right-handed alpha
Helix 48	AF3	B	564	580	Right-handed alpha
Helix 49	AF4	B	585	595	Right-handed alpha
Helix 50	AF5	B	603	605	Right-handed 310
Helix 51	AF6	B	606	613	Right-handed alpha
Helix 52	AF7	B	694	697	Right-handed 310
Helix 53	AF8	B	705	718	Right-handed alpha
Helix 54	AF9	B	719	723	Right-handed 310
Helix 55	AG1	B	724	741	Right-handed alpha
Helix 56	AG2	B	746	754	Right-handed alpha
Helix 57	AG3	B	755	758	Right-handed 310
Helix 58	AG4	B	761	783	Right-handed alpha
Helix 59	AG5	B	784	806	Right-handed alpha
Helix 60	AG6	B	813	830	Right-handed alpha
Helix 61	AG7	B	834	849	Right-handed alpha
Helix 62	AG8	B	859	870	Right-handed alpha
Helix 63	AG9	B	870	884	Right-handed alpha
Helix 64	AH1	B	886	898	Right-handed alpha
Helix 65	AH2	B	902	916	Right-handed alpha
Helix 66	AH3	B	923	934	Right-handed alpha
Helix 67	AH4	B	937	948	Right-handed alpha
Helix 68	AH5	B	948	956	Right-handed alpha
Helix 69	AH6	B	960	971	Right-handed alpha
Helix 70	AH7	B	976	991	Right-handed alpha
Helix 71	AH8	B	991	997	Right-handed alpha
Helix 72	AH9	B	997	1022	Right-handed alpha

There are 18 sheets in PDB entry 8P0I. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	229	231	first strand
Strand 2	A	215	222	anti-parallel
Strand 3	A	257	266	anti-parallel
Strand 4	A	189	198	anti-parallel
Strand 5	A	174	183	anti-parallel
Strand 6	A	314	319	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	206	210	first strand
Strand 2	A	242	246	anti-parallel
Strand 3	A	234	236	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	273	280	first strand
Strand 2	A	286	293	anti-parallel
Strand 3	A	361	364	anti-parallel
Strand 4	A	326	329	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	333	338	first strand
Strand 2	A	344	348	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	377	379	first strand
Strand 2	A	416	419	parallel
Strand 3	A	435	436	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	475	477	first strand
Strand 2	A	582	584	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	623	624	first strand
Strand 2	A	627	634	anti-parallel
Strand 3	A	679	682	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	623	624	first strand
Strand 2	A	627	634	anti-parallel
Strand 3	A	617	621	anti-parallel
Strand 4	A	701	704	parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	668	671	first strand
Strand 2	A	657	660	anti-parallel
Strand 3	A	690	692	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	257	266	first strand
Strand 2	B	189	200	anti-parallel
Strand 3	B	172	183	anti-parallel
Strand 4	B	314	322	parallel
Strand 5	B	343	347	anti-parallel
Strand 6	B	336	338	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	204	210	first strand
Strand 2	B	242	251	anti-parallel
Strand 3	B	233	234	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	275	278	first strand
Strand 2	B	288	291	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	326	329	first strand
Strand 2	B	361	364	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	370	372	first strand
Strand 2	B	377	379	anti-parallel
Strand 3	B	416	422	parallel
Strand 4	B	435	439	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	476	477	first strand
Strand 2	B	583	584	parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	678	682	first strand
Strand 2	B	627	634	anti-parallel
Strand 3	B	617	624	anti-parallel
Strand 4	B	701	704	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	654	656	first strand
Strand 2	B	672	674	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	668	669	first strand
Strand 2	B	658	661	anti-parallel
Strand 3	B	689	692	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8P0I

Analysis of interatomic Contacts of Structural Units in PDB entry:
8P0I