Analysis of interatomic Contacts of Structural Units in PDB entry:
8P0P


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8P0P entry

There are 2 chains in PDB entry 8P0P (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 0ILE 621
B
 GLY 0ILE 621
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 69 helices in PDB entry 8P0P. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 18Right-handed alpha
Helix 2
AA2
A
20 38Right-handed alpha
Helix 3
AA3
A
50 54Right-handed 310
Helix 4
AA4
A
56 77Right-handed alpha
Helix 5
AA5
A
84 94Right-handed alpha
Helix 6
AA6
A
94 104Right-handed alpha
Helix 7
AA7
A
110 115Right-handed alpha
Helix 8
AA8
A
116 118Right-handed 310
Helix 9
AA9
A
134 144Right-handed alpha
Helix 10
AB1
A
154 162Right-handed alpha
Helix 11
AB2
A
162 175Right-handed alpha
Helix 12
AB3
A
181 201Right-handed alpha
Helix 13
AB4
A
209 211Right-handed 310
Helix 14
AB5
A
212 220Right-handed alpha
Helix 15
AB6
A
221 223Right-handed 310
Helix 16
AB7
A
229 246Right-handed alpha
Helix 17
AB8
A
276 283Right-handed alpha
Helix 18
AB9
A
283 288Right-handed alpha
Helix 19
AC1
A
304 309Right-handed alpha
Helix 20
AC2
A
321 335Right-handed alpha
Helix 21
AC3
A
349 356Right-handed alpha
Helix 22
AC4
A
387 389Right-handed 310
Helix 23
AC5
A
437 441Right-handed 310
Helix 24
AC6
A
442 456Right-handed alpha
Helix 25
AC7
A
470 472Right-handed 310
Helix 26
AC8
A
473 486Right-handed alpha
Helix 27
AC9
A
496 506Right-handed alpha
Helix 28
AD1
A
519 528Right-handed alpha
Helix 29
AD2
A
539 552Right-handed alpha
Helix 30
AD3
A
555 557Right-handed 310
Helix 31
AD4
A
562 576Right-handed alpha
Helix 32
AD5
A
576 590Right-handed alpha
Helix 33
AD6
A
591 596Right-handed 310
Helix 34
AD7
A
602 620Right-handed alpha
Helix 35
AD8
B
8 18Right-handed alpha
Helix 36
AD9
B
20 38Right-handed alpha
Helix 37
AE1
B
50 54Right-handed 310
Helix 38
AE2
B
56 77Right-handed alpha
Helix 39
AE3
B
84 94Right-handed alpha
Helix 40
AE4
B
94 104Right-handed alpha
Helix 41
AE5
B
110 115Right-handed alpha
Helix 42
AE6
B
116 118Right-handed 310
Helix 43
AE7
B
134 144Right-handed alpha
Helix 44
AE8
B
154 162Right-handed alpha
Helix 45
AE9
B
162 175Right-handed alpha
Helix 46
AF1
B
181 201Right-handed alpha
Helix 47
AF2
B
209 211Right-handed 310
Helix 48
AF3
B
212 220Right-handed alpha
Helix 49
AF4
B
221 223Right-handed 310
Helix 50
AF5
B
229 245Right-handed alpha
Helix 51
AF6
B
276 283Right-handed alpha
Helix 52
AF7
B
283 288Right-handed alpha
Helix 53
AF8
B
304 309Right-handed alpha
Helix 54
AF9
B
321 335Right-handed alpha
Helix 55
AG1
B
349 356Right-handed alpha
Helix 56
AG2
B
387 389Right-handed 310
Helix 57
AG3
B
391 395Right-handed 310
Helix 58
AG4
B
437 441Right-handed 310
Helix 59
AG5
B
442 456Right-handed alpha
Helix 60
AG6
B
470 472Right-handed 310
Helix 61
AG7
B
473 486Right-handed alpha
Helix 62
AG8
B
496 506Right-handed alpha
Helix 63
AG9
B
519 528Right-handed alpha
Helix 64
AH1
B
539 552Right-handed alpha
Helix 65
AH2
B
555 557Right-handed 310
Helix 66
AH3
B
562 576Right-handed alpha
Helix 67
AH4
B
576 591Right-handed alpha
Helix 68
AH5
B
592 596Right-handed 310
Helix 69
AH6
B
602 620Right-handed alpha
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There are 6 sheets in PDB entry 8P0P. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
258 259first strand
Strand 2
A
262 268anti-parallel
Strand 3
A
294 299parallel
Strand 4
A
313 316parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
258 259first strand
Strand 2
A
262 268anti-parallel
Strand 3
A
340 343parallel
Strand 4
A
363 366parallel
Strand 5
A
381 385parallel
Strand 6
A
398 402parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
489 492first strand
Strand 2
A
459 465parallel
Strand 3
A
429 435parallel
Strand 4
A
509 511parallel
Strand 5
A
532 535parallel
Strand 6
A
559 560parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
258 259first strand
Strand 2
B
262 268anti-parallel
Strand 3
B
294 299parallel
Strand 4
B
313 316parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
258 259first strand
Strand 2
B
262 268anti-parallel
Strand 3
B
340 343parallel
Strand 4
B
363 366parallel
Strand 5
B
381 385parallel
Strand 6
B
398 402parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
489 492first strand
Strand 2
B
459 465parallel
Strand 3
B
429 435parallel
Strand 4
B
509 511parallel
Strand 5
B
532 535parallel
Strand 6
B
559 560parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il