Analysis of interatomic Contacts of Structural Units in PDB entry:
8P0Q


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8P0Q entry

There are 4 chains in PDB entry 8P0Q (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ASN 619
B
 MET 1GLN 617
C
 PHE 1THR 6
D
 TRP 4THR 6
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 66 helices in PDB entry 8P0Q. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 18Right-handed alpha
Helix 2
AA2
A
20 38Right-handed alpha
Helix 3
AA3
A
50 54Right-handed 310
Helix 4
AA4
A
56 78Right-handed alpha
Helix 5
AA5
A
84 94Right-handed alpha
Helix 6
AA6
A
94 104Right-handed alpha
Helix 7
AA7
A
110 116Right-handed alpha
Helix 8
AA8
A
134 144Right-handed alpha
Helix 9
AA9
A
154 160Right-handed alpha
Helix 10
AB1
A
162 173Right-handed alpha
Helix 11
AB2
A
181 195Right-handed alpha
Helix 12
AB3
A
195 200Right-handed alpha
Helix 13
AB4
A
209 211Right-handed 310
Helix 14
AB5
A
212 220Right-handed alpha
Helix 15
AB6
A
221 223Right-handed 310
Helix 16
AB7
A
229 245Right-handed alpha
Helix 17
AB8
A
276 290Right-handed alpha
Helix 18
AB9
A
304 309Right-handed alpha
Helix 19
AC1
A
321 336Right-handed alpha
Helix 20
AC2
A
349 356Right-handed alpha
Helix 21
AC3
A
387 389Right-handed 310
Helix 22
AC4
A
439 441Right-handed 310
Helix 23
AC5
A
442 456Right-handed alpha
Helix 24
AC6
A
470 472Right-handed 310
Helix 25
AC7
A
473 486Right-handed alpha
Helix 26
AC8
A
496 506Right-handed alpha
Helix 27
AC9
A
519 528Right-handed alpha
Helix 28
AD1
A
539 551Right-handed alpha
Helix 29
AD2
A
555 557Right-handed 310
Helix 30
AD3
A
562 576Right-handed alpha
Helix 31
AD4
A
576 590Right-handed alpha
Helix 32
AD5
A
591 597Right-handed alpha
Helix 33
AD6
A
602 618Right-handed alpha
Helix 34
AD7
B
8 18Right-handed alpha
Helix 35
AD8
B
20 38Right-handed alpha
Helix 36
AD9
B
50 54Right-handed 310
Helix 37
AE1
B
56 78Right-handed alpha
Helix 38
AE2
B
84 93Right-handed alpha
Helix 39
AE3
B
94 104Right-handed alpha
Helix 40
AE4
B
110 117Right-handed alpha
Helix 41
AE5
B
134 144Right-handed alpha
Helix 42
AE6
B
154 160Right-handed alpha
Helix 43
AE7
B
162 173Right-handed alpha
Helix 44
AE8
B
181 195Right-handed alpha
Helix 45
AE9
B
195 200Right-handed alpha
Helix 46
AF1
B
209 211Right-handed 310
Helix 47
AF2
B
212 220Right-handed alpha
Helix 48
AF3
B
221 223Right-handed 310
Helix 49
AF4
B
229 245Right-handed alpha
Helix 50
AF5
B
276 290Right-handed alpha
Helix 51
AF6
B
304 309Right-handed alpha
Helix 52
AF7
B
321 332Right-handed alpha
Helix 53
AF8
B
349 356Right-handed alpha
Helix 54
AF9
B
387 389Right-handed 310
Helix 55
AG1
B
439 441Right-handed 310
Helix 56
AG2
B
442 456Right-handed alpha
Helix 57
AG3
B
470 472Right-handed 310
Helix 58
AG4
B
473 486Right-handed alpha
Helix 59
AG5
B
496 506Right-handed alpha
Helix 60
AG6
B
519 528Right-handed alpha
Helix 61
AG7
B
539 551Right-handed alpha
Helix 62
AG8
B
555 557Right-handed 310
Helix 63
AG9
B
562 576Right-handed alpha
Helix 64
AH1
B
576 590Right-handed alpha
Helix 65
AH2
B
591 597Right-handed alpha
Helix 66
AH3
B
602 615Right-handed alpha
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There are 6 sheets in PDB entry 8P0Q. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
258 259first strand
Strand 2
A
262 268anti-parallel
Strand 3
A
294 299parallel
Strand 4
A
313 316parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
258 259first strand
Strand 2
A
262 268anti-parallel
Strand 3
A
340 343parallel
Strand 4
A
363 366parallel
Strand 5
A
381 385parallel
Strand 6
A
398 402parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
489 492first strand
Strand 2
A
459 467parallel
Strand 3
A
429 437parallel
Strand 4
A
509 511parallel
Strand 5
A
532 535parallel
Strand 6
A
559 560parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
258 259first strand
Strand 2
B
262 268anti-parallel
Strand 3
B
294 299parallel
Strand 4
B
313 316parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
258 259first strand
Strand 2
B
262 268anti-parallel
Strand 3
B
340 343parallel
Strand 4
B
363 366parallel
Strand 5
B
381 385parallel
Strand 6
B
398 402parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
489 492first strand
Strand 2
B
459 467parallel
Strand 3
B
429 437parallel
Strand 4
B
509 511parallel
Strand 5
B
532 535parallel
Strand 6
B
559 560parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il