Analysis of interatomic Contacts of Structural Units in PDB entry:
8P0U

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8P0U entry

There are 5 chains in PDB entry 8P0U (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 2	TYR 622
B	MET 1	ARG 636
C	ASP 56	ASP 731
R	U 27	U 32
V	A 1	G 12

There are 55 helices in PDB entry 8P0U. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	9	18	Right-handed alpha
Helix 2	AA2	A	21	25	Right-handed 310
Helix 3	AA3	A	27	47	Right-handed alpha
Helix 4	AA4	A	64	75	Right-handed alpha
Helix 5	AA5	A	103	107	Right-handed 310
Helix 6	AA6	A	128	133	Right-handed alpha
Helix 7	AA7	A	134	155	Right-handed alpha
Helix 8	AA8	A	157	166	Right-handed alpha
Helix 9	AA9	A	176	184	Right-handed alpha
Helix 10	AB1	A	246	257	Right-handed alpha
Helix 11	AB2	A	270	272	Right-handed 310
Helix 12	AB3	A	273	286	Right-handed alpha
Helix 13	AB4	A	296	301	Right-handed alpha
Helix 14	AB5	A	305	316	Right-handed alpha
Helix 15	AB6	A	335	345	Right-handed alpha
Helix 16	AB7	A	362	381	Right-handed alpha
Helix 17	AB8	A	382	400	Right-handed alpha
Helix 18	AB9	A	485	492	Right-handed alpha
Helix 19	AC1	A	493	497	Right-handed 310
Helix 20	AC2	A	498	517	Right-handed alpha
Helix 21	AC3	A	540	557	Right-handed alpha
Helix 22	AC4	A	559	581	Right-handed alpha
Helix 23	AC5	A	592	599	Right-handed alpha
Helix 24	AC6	A	604	617	Right-handed alpha
Helix 25	AC7	B	1	5	Right-handed 310
Helix 26	AC8	B	13	20	Right-handed 310
Helix 27	AC9	B	33	49	Right-handed alpha
Helix 28	AD1	B	53	58	Right-handed alpha
Helix 29	AD2	B	66	70	Right-handed 310
Helix 30	AD3	B	80	95	Right-handed alpha
Helix 31	AD4	B	95	109	Right-handed alpha
Helix 32	AD5	B	110	113	Right-handed 310
Helix 33	AD6	B	114	121	Right-handed 310
Helix 34	AD7	B	134	151	Right-handed alpha
Helix 35	AD8	B	157	169	Right-handed alpha
Helix 36	AD9	B	216	224	Right-handed alpha
Helix 37	AE1	B	250	266	Right-handed alpha
Helix 38	AE2	B	276	287	Right-handed alpha
Helix 39	AE3	B	304	308	Right-handed 310
Helix 40	AE4	B	310	325	Right-handed alpha
Helix 41	AE5	B	328	344	Right-handed alpha
Helix 42	AE6	B	373	378	Right-handed 310
Helix 43	AE7	B	396	407	Right-handed alpha
Helix 44	AE8	B	432	451	Right-handed alpha
Helix 45	AE9	B	455	459	Right-handed 310
Helix 46	AF1	B	496	514	Right-handed alpha
Helix 47	AF2	B	518	537	Right-handed alpha
Helix 48	AF3	B	543	552	Right-handed alpha
Helix 49	AF4	B	568	572	Right-handed 310
Helix 50	AF5	B	575	583	Right-handed alpha
Helix 51	AF6	B	587	595	Right-handed alpha
Helix 52	AF7	C	57	69	Right-handed alpha
Helix 53	AF8	C	107	114	Right-handed alpha
Helix 54	AF9	C	121	142	Right-handed alpha
Helix 55	AG1	C	720	731	Right-handed alpha

There are 13 sheets in PDB entry 8P0U. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	50	51	first strand
Strand 2	A	54	55	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	57	59	first strand
Strand 2	A	87	89	anti-parallel
Strand 3	A	94	100	anti-parallel
Strand 4	A	115	119	parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	210	211	first strand
Strand 2	A	584	587	anti-parallel
Strand 3	B	460	463	anti-parallel
Strand 4	B	294	300	anti-parallel
Strand 5	B	423	430	anti-parallel
Strand 6	B	416	420	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	240	242	first strand
Strand 2	A	423	431	anti-parallel
Strand 3	A	442	451	anti-parallel
Strand 4	A	472	484	anti-parallel
Strand 5	A	463	469	anti-parallel
Strand 6	A	261	264	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	240	242	first strand
Strand 2	A	423	431	anti-parallel
Strand 3	A	410	417	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	322	323	first strand
Strand 2	B	353	356	anti-parallel
Strand 3	B	362	364	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	526	527	first strand
Strand 2	A	538	539	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	124	126	first strand
Strand 2	B	131	133	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	173	178	first strand
Strand 2	B	210	215	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	242	245	first strand
Strand 2	B	225	230	anti-parallel
Strand 3	B	345	348	parallel
Strand 4	B	384	387	anti-parallel
Strand 5	B	380	381	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	467	470	first strand
Strand 2	B	473	476	anti-parallel
Strand 3	B	479	482	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	73	75	first strand
Strand 2	C	103	105	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	84	85	first strand
Strand 2	C	88	89	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8P0U

Analysis of interatomic Contacts of Structural Units in PDB entry:
8P0U