Analysis of interatomic Contacts of Structural Units in PDB entry:
8P0V


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8P0V entry

There are 5 chains in PDB entry 8P0V (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
K
 LEU 309SER 631
L
 MET 1ALA 627
M
 MET 1ILE 357
N
 MET 1PRO 182
O
 MET 1THR 963
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 66 helices in PDB entry 8P0V. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
K
312 376Right-handed alpha
Helix 2
AA2
K
379 424Right-handed alpha
Helix 3
AA3
K
447 488Right-handed alpha
Helix 4
AA4
K
490 551Right-handed alpha
Helix 5
AA5
K
552 631Right-handed alpha
Helix 6
AA6
L
2 16Right-handed alpha
Helix 7
AA7
L
25 29Right-handed 310
Helix 8
AA8
L
30 46Right-handed alpha
Helix 9
AA9
L
46 51Right-handed alpha
Helix 10
AB1
L
60 77Right-handed alpha
Helix 11
AB2
L
85 90Right-handed alpha
Helix 12
AB3
L
93 108Right-handed alpha
Helix 13
AB4
L
321 392Right-handed alpha
Helix 14
AB5
L
395 484Right-handed alpha
Helix 15
AB6
L
489 548Right-handed alpha
Helix 16
AB7
L
550 597Right-handed alpha
Helix 17
AB8
L
598 627Right-handed alpha
Helix 18
AB9
M
2 12Right-handed alpha
Helix 19
AC1
M
36 47Right-handed alpha
Helix 20
AC2
M
48 51Right-handed 310
Helix 21
AC3
M
98 117Right-handed alpha
Helix 22
AC4
M
118 133Right-handed alpha
Helix 23
AC5
M
146 148Right-handed 310
Helix 24
AC6
M
149 156Right-handed alpha
Helix 25
AC7
M
158 167Right-handed alpha
Helix 26
AC8
M
168 179Right-handed alpha
Helix 27
AC9
M
189 203Right-handed alpha
Helix 28
AD1
M
209 213Right-handed 310
Helix 29
AD2
M
220 230Right-handed alpha
Helix 30
AD3
M
239 245Right-handed 310
Helix 31
AD4
M
265 270Right-handed alpha
Helix 32
AD5
M
273 289Right-handed alpha
Helix 33
AD6
M
293 315Right-handed alpha
Helix 34
AD7
M
328 335Right-handed alpha
Helix 35
AD8
M
338 352Right-handed alpha
Helix 36
AD9
N
10 15Right-handed alpha
Helix 37
AE1
N
19 26Right-handed alpha
Helix 38
AE2
N
42 53Right-handed alpha
Helix 39
AE3
N
87 90Right-handed 310
Helix 40
AE4
N
95 107Right-handed alpha
Helix 41
AE5
O
12 21Right-handed alpha
Helix 42
AE6
O
460 475Right-handed alpha
Helix 43
AE7
O
478 496Right-handed alpha
Helix 44
AE8
O
498 517Right-handed alpha
Helix 45
AE9
O
518 534Right-handed alpha
Helix 46
AF1
O
537 542Right-handed alpha
Helix 47
AF2
O
542 557Right-handed alpha
Helix 48
AF3
O
559 566Right-handed alpha
Helix 49
AF4
O
568 576Right-handed alpha
Helix 50
AF5
O
578 597Right-handed alpha
Helix 51
AF6
O
603 621Right-handed alpha
Helix 52
AF7
O
626 644Right-handed alpha
Helix 53
AF8
O
649 664Right-handed alpha
Helix 54
AF9
O
667 690Right-handed alpha
Helix 55
AG1
O
694 715Right-handed alpha
Helix 56
AG2
O
717 735Right-handed alpha
Helix 57
AG3
O
737 755Right-handed alpha
Helix 58
AG4
O
767 785Right-handed alpha
Helix 59
AG5
O
795 808Right-handed alpha
Helix 60
AG6
O
814 833Right-handed alpha
Helix 61
AG7
O
845 851Right-handed alpha
Helix 62
AG8
O
853 881Right-handed alpha
Helix 63
AG9
O
883 902Right-handed alpha
Helix 64
AH1
O
906 924Right-handed alpha
Helix 65
AH2
O
927 943Right-handed alpha
Helix 66
AH3
O
947 957Right-handed alpha
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There are 9 sheets in PDB entry 8P0V. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
M
26 28first strand
Strand 2
M
14 20anti-parallel
Strand 3
M
87 93anti-parallel
Strand 4
M
67 73anti-parallel
Strand 5
M
59 64anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
M
134 135first strand
Strand 2
M
143 144anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
M
233 237first strand
Strand 2
M
182 186parallel
Strand 3
M
251 254parallel
Strand 4
M
259 260anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
M
316 318first strand
Strand 2
M
325 327anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
N
55 58first strand
Strand 2
N
33 36parallel
Strand 3
N
2 6parallel
Strand 4
N
149 156anti-parallel
Strand 5
N
159 168anti-parallel
Strand 6
N
171 173anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
N
55 58first strand
Strand 2
N
33 36parallel
Strand 3
N
2 6parallel
Strand 4
N
149 156anti-parallel
Strand 5
N
159 168anti-parallel
Strand 6
N
178 180anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
N
72 77first strand
Strand 2
N
80 85anti-parallel
Strand 3
N
110 112parallel
Strand 4
N
127 131parallel
Strand 5
N
120 124anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
N
175 176first strand
Strand 2
O
25 26anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
O
759 761first strand
Strand 2
O
764 766anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il