Analysis of interatomic Contacts of Structural Units in PDB entry:
8P0W

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8P0W entry

There are 12 chains in PDB entry 8P0W (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ASN 190
B	MET 1	LYS 199
C	MET 1	LEU 195
D	MET 1	GLY 199
E	SER 23	ASP 224
F	THR 16	VAL 85
G	MET 1	CYS 200
H	MET 1	LYS 183
I	MET 1	LYS 198
J	MET 1	THR 202
K	VAL 25	GLN 297
L	ALA 120	HIS 302

There are 92 helices in PDB entry 8P0W. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	8	24	Right-handed alpha
Helix 2	AA2	A	31	40	Right-handed alpha
Helix 3	AA3	A	44	66	Right-handed alpha
Helix 4	AA4	A	68	81	Right-handed alpha
Helix 5	AA5	A	87	113	Right-handed alpha
Helix 6	AA6	A	164	188	Right-handed alpha
Helix 7	AA7	B	6	14	Right-handed alpha
Helix 8	AA8	B	15	19	Right-handed 310
Helix 9	AA9	B	20	38	Right-handed alpha
Helix 10	AB1	B	41	52	Right-handed alpha
Helix 11	AB2	B	54	76	Right-handed alpha
Helix 12	AB3	B	78	87	Right-handed alpha
Helix 13	AB4	B	92	115	Right-handed alpha
Helix 14	AB5	B	116	118	Right-handed 310
Helix 15	AB6	B	168	186	Right-handed alpha
Helix 16	AB7	B	188	198	Right-handed alpha
Helix 17	AB8	C	4	15	Right-handed alpha
Helix 18	AB9	C	21	38	Right-handed alpha
Helix 19	AC1	C	55	76	Right-handed alpha
Helix 20	AC2	C	79	90	Right-handed alpha
Helix 21	AC3	C	93	117	Right-handed alpha
Helix 22	AC4	C	171	194	Right-handed alpha
Helix 23	AC5	D	12	23	Right-handed alpha
Helix 24	AC6	D	26	42	Right-handed alpha
Helix 25	AC7	D	47	56	Right-handed alpha
Helix 26	AC8	D	57	59	Right-handed 310
Helix 27	AC9	D	61	82	Right-handed alpha
Helix 28	AD1	D	85	96	Right-handed alpha
Helix 29	AD2	D	99	125	Right-handed alpha
Helix 30	AD3	D	178	199	Right-handed alpha
Helix 31	AD4	E	30	40	Right-handed alpha
Helix 32	AD5	E	41	43	Right-handed 310
Helix 33	AD6	E	44	60	Right-handed alpha
Helix 34	AD7	E	64	76	Right-handed alpha
Helix 35	AD8	E	78	98	Right-handed alpha
Helix 36	AD9	E	105	116	Right-handed alpha
Helix 37	AE1	E	119	132	Right-handed alpha
Helix 38	AE2	E	134	144	Right-handed alpha
Helix 39	AE3	E	145	147	Right-handed 310
Helix 40	AE4	E	193	222	Right-handed alpha
Helix 41	AE5	F	52	54	Right-handed 310
Helix 42	AE6	F	65	85	Right-handed alpha
Helix 43	AE7	G	13	25	Right-handed alpha
Helix 44	AE8	G	26	42	Right-handed alpha
Helix 45	AE9	G	46	62	Right-handed alpha
Helix 46	AF1	G	64	86	Right-handed alpha
Helix 47	AF2	G	88	100	Right-handed alpha
Helix 48	AF3	G	102	128	Right-handed alpha
Helix 49	AF4	G	179	197	Right-handed alpha
Helix 50	AF5	H	7	15	Right-handed 310
Helix 51	AF6	H	16	18	Right-handed 310
Helix 52	AF7	H	19	33	Right-handed alpha
Helix 53	AF8	H	38	42	Right-handed 310
Helix 54	AF9	H	47	68	Right-handed alpha
Helix 55	AG1	H	71	79	Right-handed alpha
Helix 56	AG2	H	83	111	Right-handed alpha
Helix 57	AG3	H	161	183	Right-handed alpha
Helix 58	AG4	I	5	18	Right-handed alpha
Helix 59	AG5	I	20	34	Right-handed alpha
Helix 60	AG6	I	35	51	Right-handed alpha
Helix 61	AG7	I	53	75	Right-handed alpha
Helix 62	AG8	I	78	86	Right-handed alpha
Helix 63	AG9	I	91	116	Right-handed alpha
Helix 64	AH1	I	156	161	Right-handed alpha
Helix 65	AH2	I	174	194	Right-handed alpha
Helix 66	AH3	J	12	25	Right-handed alpha
Helix 67	AH4	J	29	41	Right-handed alpha
Helix 68	AH5	J	50	62	Right-handed alpha
Helix 69	AH6	J	64	86	Right-handed alpha
Helix 70	AH7	J	88	99	Right-handed alpha
Helix 71	AH8	J	102	126	Right-handed alpha
Helix 72	AH9	J	180	200	Right-handed alpha
Helix 73	AI1	K	26	38	Right-handed alpha
Helix 74	AI2	K	39	43	Right-handed 310
Helix 75	AI3	K	48	65	Right-handed alpha
Helix 76	AI4	K	81	97	Right-handed alpha
Helix 77	AI5	K	104	111	Right-handed alpha
Helix 78	AI6	K	112	135	Right-handed alpha
Helix 79	AI7	K	136	148	Right-handed alpha
Helix 80	AI8	K	152	176	Right-handed alpha
Helix 81	AI9	K	193	204	Right-handed alpha
Helix 82	AJ1	K	249	258	Right-handed alpha
Helix 83	AJ2	K	273	296	Right-handed alpha
Helix 84	AJ3	L	121	139	Right-handed alpha
Helix 85	AJ4	L	144	148	Right-handed 310
Helix 86	AJ5	L	149	156	Right-handed alpha
Helix 87	AJ6	L	178	185	Right-handed alpha
Helix 88	AJ7	L	191	196	Right-handed 310
Helix 89	AJ8	L	198	218	Right-handed alpha
Helix 90	AJ9	L	242	261	Right-handed alpha
Helix 91	AK1	L	262	264	Right-handed 310
Helix 92	AK2	L	292	301	Right-handed alpha

There are 6 sheets in PDB entry 8P0W. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	157	163	first strand
Strand 2	A	141	150	anti-parallel
Strand 3	A	118	132	anti-parallel
Strand 4	I	122	136	anti-parallel
Strand 5	I	144	154	anti-parallel
Strand 6	I	166	173	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	159	167	first strand
Strand 2	B	145	156	anti-parallel
Strand 3	B	123	137	anti-parallel
Strand 4	H	115	130	anti-parallel
Strand 5	H	138	149	anti-parallel
Strand 6	H	152	160	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	165	170	first strand
Strand 2	C	146	155	anti-parallel
Strand 3	C	125	138	anti-parallel
Strand 4	J	132	147	anti-parallel
Strand 5	J	155	166	anti-parallel
Strand 6	J	171	179	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	170	177	first strand
Strand 2	D	152	162	anti-parallel
Strand 3	D	130	144	anti-parallel
Strand 4	F	18	32	anti-parallel
Strand 5	F	40	50	anti-parallel
Strand 6	F	56	64	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	187	192	first strand
Strand 2	E	173	182	anti-parallel
Strand 3	E	152	165	anti-parallel
Strand 4	G	133	147	anti-parallel
Strand 5	G	155	166	anti-parallel
Strand 6	G	169	178	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	182	184	first strand
Strand 2	K	260	262	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8P0W

Analysis of interatomic Contacts of Structural Units in PDB entry:
8P0W