Analysis of interatomic Contacts of Structural Units in PDB entry:
8P0Y

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8P0Y entry

There are 17 chains in PDB entry 8P0Y (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
V	GLN 632	LEU 697
Z	TRP 634	LEU 697
Y	ASP 633	LEU 697
T	GLN 632	LEU 697
P	ASP 633	LEU 697
S	TRP 634	LEU 697
X	ASP 633	LEU 697
W	GLN 632	LEU 697
Q	ASP 633	LEU 697
R	PRO 635	LEU 697
U	ASP 629	LEU 697
a	GLU 628	LEU 697
O	ASP 633	LEU 697
A	GLN 632	LEU 697
C	UNK 103	UNK 107
B	UNK 591	UNK 623
D	UNK 590	UNK 623

There are 49 helices in PDB entry 8P0Y. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	V	649	654	Right-handed 310
Helix 2	AA2	V	658	668	Right-handed alpha
Helix 3	AA3	V	671	682	Right-handed alpha
Helix 4	AA4	V	686	697	Right-handed alpha
Helix 5	AA5	Z	658	668	Right-handed alpha
Helix 6	AA6	Z	671	682	Right-handed alpha
Helix 7	AA7	Z	686	697	Right-handed alpha
Helix 8	AA8	Y	650	654	Right-handed 310
Helix 9	AA9	Y	658	667	Right-handed alpha
Helix 10	AB1	Y	671	682	Right-handed alpha
Helix 11	AB2	Y	686	697	Right-handed alpha
Helix 12	AB3	T	658	668	Right-handed alpha
Helix 13	AB4	T	671	682	Right-handed alpha
Helix 14	AB5	T	686	697	Right-handed alpha
Helix 15	AB6	P	649	654	Right-handed alpha
Helix 16	AB7	P	658	668	Right-handed alpha
Helix 17	AB8	P	671	682	Right-handed alpha
Helix 18	AB9	P	686	697	Right-handed alpha
Helix 19	AC1	S	650	654	Right-handed 310
Helix 20	AC2	S	658	667	Right-handed alpha
Helix 21	AC3	S	671	682	Right-handed alpha
Helix 22	AC4	S	686	697	Right-handed alpha
Helix 23	AC5	X	658	668	Right-handed alpha
Helix 24	AC6	X	671	682	Right-handed alpha
Helix 25	AC7	X	686	697	Right-handed alpha
Helix 26	AC8	W	649	654	Right-handed alpha
Helix 27	AC9	W	658	668	Right-handed alpha
Helix 28	AD1	W	671	682	Right-handed alpha
Helix 29	AD2	W	686	697	Right-handed alpha
Helix 30	AD3	Q	658	668	Right-handed alpha
Helix 31	AD4	Q	671	682	Right-handed alpha
Helix 32	AD5	Q	686	697	Right-handed alpha
Helix 33	AD6	R	658	667	Right-handed alpha
Helix 34	AD7	R	671	682	Right-handed alpha
Helix 35	AD8	R	686	697	Right-handed alpha
Helix 36	AD9	U	658	668	Right-handed alpha
Helix 37	AE1	U	671	682	Right-handed alpha
Helix 38	AE2	U	686	697	Right-handed alpha
Helix 39	AE3	a	650	654	Right-handed 310
Helix 40	AE4	a	658	667	Right-handed alpha
Helix 41	AE5	a	671	682	Right-handed alpha
Helix 42	AE6	a	683	685	Right-handed 310
Helix 43	AE7	a	686	697	Right-handed alpha
Helix 44	AE8	O	658	667	Right-handed alpha
Helix 45	AE9	O	671	682	Right-handed alpha
Helix 46	AF1	O	686	697	Right-handed alpha
Helix 47	AF2	A	658	668	Right-handed alpha
Helix 48	AF3	A	671	682	Right-handed alpha
Helix 49	AF4	A	686	697	Right-handed alpha

There are 14 sheets in PDB entry 8P0Y. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	636	639	first strand
Strand 2	V	645	648	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	636	639	first strand
Strand 2	Z	645	648	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	636	639	first strand
Strand 2	Y	645	648	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	636	639	first strand
Strand 2	T	645	648	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	636	639	first strand
Strand 2	P	645	648	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	636	639	first strand
Strand 2	S	645	648	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	636	639	first strand
Strand 2	X	645	648	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	645	647	first strand
Strand 2	W	637	639	anti-parallel
Strand 3	D	609	610	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	636	639	first strand
Strand 2	Q	645	648	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	636	639	first strand
Strand 2	R	645	648	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	636	639	first strand
Strand 2	U	645	648	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	636	639	first strand
Strand 2	a	645	648	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	636	639	first strand
Strand 2	O	645	648	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	636	639	first strand
Strand 2	A	645	648	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8P0Y

Analysis of interatomic Contacts of Structural Units in PDB entry:
8P0Y