Analysis of interatomic Contacts of Structural Units in PDB entry:
8P11

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8P11 entry

There are 10 chains in PDB entry 8P11 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 20	GLY 224
B	LEU 20	LYS 223
C	LEU 20	GLY 224
D	LEU 20	GLY 224
E	LEU 20	LYS 223
F	LEU 20	GLY 224
G	LEU 20	ARG 225
H	LEU 20	GLY 224
I	LEU 20	GLY 224
J	LEU 20	LYS 223

There are 30 helices in PDB entry 8P11. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	21	33	Right-handed alpha
Helix 2	AA2	A	80	83	Right-handed 310
Helix 3	AA3	A	98	100	Right-handed 310
Helix 4	AA4	B	21	33	Right-handed alpha
Helix 5	AA5	B	80	83	Right-handed 310
Helix 6	AA6	B	98	100	Right-handed 310
Helix 7	AA7	C	21	33	Right-handed alpha
Helix 8	AA8	C	80	83	Right-handed 310
Helix 9	AA9	C	98	100	Right-handed 310
Helix 10	AB1	D	21	33	Right-handed alpha
Helix 11	AB2	D	80	83	Right-handed 310
Helix 12	AB3	D	98	100	Right-handed 310
Helix 13	AB4	E	21	33	Right-handed alpha
Helix 14	AB5	E	80	83	Right-handed 310
Helix 15	AB6	E	98	100	Right-handed 310
Helix 16	AB7	F	21	33	Right-handed alpha
Helix 17	AB8	F	80	83	Right-handed 310
Helix 18	AB9	F	98	100	Right-handed 310
Helix 19	AC1	G	21	33	Right-handed alpha
Helix 20	AC2	G	80	83	Right-handed 310
Helix 21	AC3	G	98	100	Right-handed 310
Helix 22	AC4	H	21	33	Right-handed alpha
Helix 23	AC5	H	80	83	Right-handed 310
Helix 24	AC6	H	98	100	Right-handed 310
Helix 25	AC7	I	21	33	Right-handed alpha
Helix 26	AC8	I	80	83	Right-handed 310
Helix 27	AC9	I	98	100	Right-handed 310
Helix 28	AD1	J	21	33	Right-handed alpha
Helix 29	AD2	J	80	83	Right-handed 310
Helix 30	AD3	J	98	100	Right-handed 310

There are 30 sheets in PDB entry 8P11. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	92	96	first strand
Strand 2	A	121	125	anti-parallel
Strand 3	A	129	132	anti-parallel
Strand 4	A	66	78	anti-parallel
Strand 5	A	135	141	anti-parallel
Strand 6	A	115	116	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	92	96	first strand
Strand 2	A	121	125	anti-parallel
Strand 3	A	129	132	anti-parallel
Strand 4	A	66	78	anti-parallel
Strand 5	A	46	61	anti-parallel
Strand 6	A	169	172	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	105	107	first strand
Strand 2	A	153	161	anti-parallel
Strand 3	A	210	222	anti-parallel
Strand 4	A	190	203	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	92	96	first strand
Strand 2	B	121	125	anti-parallel
Strand 3	B	129	132	anti-parallel
Strand 4	B	66	78	anti-parallel
Strand 5	B	135	141	anti-parallel
Strand 6	B	115	116	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	92	96	first strand
Strand 2	B	121	125	anti-parallel
Strand 3	B	129	132	anti-parallel
Strand 4	B	66	78	anti-parallel
Strand 5	B	46	61	anti-parallel
Strand 6	B	169	172	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	105	107	first strand
Strand 2	B	153	161	anti-parallel
Strand 3	B	210	222	anti-parallel
Strand 4	B	190	203	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	92	96	first strand
Strand 2	C	121	125	anti-parallel
Strand 3	C	129	132	anti-parallel
Strand 4	C	66	78	anti-parallel
Strand 5	C	135	141	anti-parallel
Strand 6	C	115	116	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	92	96	first strand
Strand 2	C	121	125	anti-parallel
Strand 3	C	129	132	anti-parallel
Strand 4	C	66	78	anti-parallel
Strand 5	C	46	61	anti-parallel
Strand 6	C	169	172	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	105	107	first strand
Strand 2	C	153	161	anti-parallel
Strand 3	C	210	222	anti-parallel
Strand 4	C	190	203	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	92	96	first strand
Strand 2	D	121	125	anti-parallel
Strand 3	D	129	132	anti-parallel
Strand 4	D	66	78	anti-parallel
Strand 5	D	135	141	anti-parallel
Strand 6	D	115	116	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	92	96	first strand
Strand 2	D	121	125	anti-parallel
Strand 3	D	129	132	anti-parallel
Strand 4	D	66	78	anti-parallel
Strand 5	D	46	61	anti-parallel
Strand 6	D	169	172	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	105	107	first strand
Strand 2	D	153	161	anti-parallel
Strand 3	D	210	222	anti-parallel
Strand 4	D	190	203	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	92	96	first strand
Strand 2	E	121	125	anti-parallel
Strand 3	E	129	132	anti-parallel
Strand 4	E	66	78	anti-parallel
Strand 5	E	135	141	anti-parallel
Strand 6	E	115	116	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	92	96	first strand
Strand 2	E	121	125	anti-parallel
Strand 3	E	129	132	anti-parallel
Strand 4	E	66	78	anti-parallel
Strand 5	E	46	61	anti-parallel
Strand 6	E	169	172	parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	105	107	first strand
Strand 2	E	153	161	anti-parallel
Strand 3	E	210	222	anti-parallel
Strand 4	E	190	203	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	92	96	first strand
Strand 2	F	121	125	anti-parallel
Strand 3	F	129	132	anti-parallel
Strand 4	F	66	78	anti-parallel
Strand 5	F	135	141	anti-parallel
Strand 6	F	115	116	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	92	96	first strand
Strand 2	F	121	125	anti-parallel
Strand 3	F	129	132	anti-parallel
Strand 4	F	66	78	anti-parallel
Strand 5	F	46	61	anti-parallel
Strand 6	F	169	172	parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	105	107	first strand
Strand 2	F	153	161	anti-parallel
Strand 3	F	210	222	anti-parallel
Strand 4	F	190	203	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	92	96	first strand
Strand 2	G	121	125	anti-parallel
Strand 3	G	129	132	anti-parallel
Strand 4	G	66	78	anti-parallel
Strand 5	G	135	141	anti-parallel
Strand 6	G	115	116	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	92	96	first strand
Strand 2	G	121	125	anti-parallel
Strand 3	G	129	132	anti-parallel
Strand 4	G	66	78	anti-parallel
Strand 5	G	46	61	anti-parallel
Strand 6	G	169	172	parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	105	107	first strand
Strand 2	G	153	161	anti-parallel
Strand 3	G	210	222	anti-parallel
Strand 4	G	190	203	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	92	96	first strand
Strand 2	H	121	125	anti-parallel
Strand 3	H	129	132	anti-parallel
Strand 4	H	66	78	anti-parallel
Strand 5	H	135	141	anti-parallel
Strand 6	H	115	116	anti-parallel

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There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	92	96	first strand
Strand 2	H	121	125	anti-parallel
Strand 3	H	129	132	anti-parallel
Strand 4	H	66	78	anti-parallel
Strand 5	H	46	61	anti-parallel
Strand 6	H	169	172	parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	105	107	first strand
Strand 2	H	153	161	anti-parallel
Strand 3	H	211	222	anti-parallel
Strand 4	H	190	202	anti-parallel

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There are 6 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	92	96	first strand
Strand 2	I	121	125	anti-parallel
Strand 3	I	129	132	anti-parallel
Strand 4	I	66	78	anti-parallel
Strand 5	I	135	141	anti-parallel
Strand 6	I	115	116	anti-parallel

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There are 6 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	92	96	first strand
Strand 2	I	121	125	anti-parallel
Strand 3	I	129	132	anti-parallel
Strand 4	I	66	78	anti-parallel
Strand 5	I	46	61	anti-parallel
Strand 6	I	169	172	parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	105	107	first strand
Strand 2	I	153	161	anti-parallel
Strand 3	I	210	222	anti-parallel
Strand 4	I	190	203	anti-parallel

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There are 6 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	92	96	first strand
Strand 2	J	121	125	anti-parallel
Strand 3	J	129	132	anti-parallel
Strand 4	J	66	78	anti-parallel
Strand 5	J	135	141	anti-parallel
Strand 6	J	115	116	anti-parallel

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There are 6 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	92	96	first strand
Strand 2	J	121	125	anti-parallel
Strand 3	J	129	132	anti-parallel
Strand 4	J	66	78	anti-parallel
Strand 5	J	46	61	anti-parallel
Strand 6	J	169	172	parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	105	107	first strand
Strand 2	J	153	161	anti-parallel
Strand 3	J	210	222	anti-parallel
Strand 4	J	190	203	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8P11

Analysis of interatomic Contacts of Structural Units in PDB entry:
8P11