Analysis of interatomic Contacts of Structural Units in PDB entry:
8P12

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8P12 entry

There are 6 chains in PDB entry 8P12 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
R	MET 1	MET 317
A	THR 4	PHE 354
B	CYS 25	ASN 340
G	MET 31	GLU 66
L	ASP 20	CYS 238
H	VAL 21	ARG 238

There are 32 helices in PDB entry 8P12. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	R	33	65	Right-handed alpha
Helix 2	AA2	R	66	69	Right-handed 310
Helix 3	AA3	R	70	72	Right-handed 310
Helix 4	AA4	R	73	90	Right-handed alpha
Helix 5	AA5	R	90	99	Right-handed alpha
Helix 6	AA6	R	105	141	Right-handed alpha
Helix 7	AA7	R	149	169	Right-handed alpha
Helix 8	AA8	R	199	211	Right-handed alpha
Helix 9	AA9	R	212	237	Right-handed alpha
Helix 10	AB1	R	240	278	Right-handed alpha
Helix 11	AB2	R	284	290	Right-handed alpha
Helix 12	AB3	R	290	297	Right-handed alpha
Helix 13	AB4	R	297	307	Right-handed alpha
Helix 14	AB5	R	310	317	Right-handed alpha
Helix 15	AB6	A	5	33	Right-handed alpha
Helix 16	AB7	A	45	58	Right-handed alpha
Helix 17	AB8	A	207	212	Right-handed alpha
Helix 18	AB9	A	213	216	Right-handed 310
Helix 19	AC1	A	228	230	Right-handed 310
Helix 20	AC2	A	243	255	Right-handed alpha
Helix 21	AC3	A	256	261	Right-handed alpha
Helix 22	AC4	A	270	279	Right-handed alpha
Helix 23	AC5	A	282	286	Right-handed 310
Helix 24	AC6	A	296	309	Right-handed alpha
Helix 25	AC7	A	327	351	Right-handed alpha
Helix 26	AC8	B	29	34	Right-handed alpha
Helix 27	AC9	G	32	48	Right-handed alpha
Helix 28	AD1	G	51	56	Right-handed alpha
Helix 29	AD2	L	103	107	Right-handed 310
Helix 30	AD3	L	145	152	Right-handed alpha
Helix 31	AD4	L	206	212	Right-handed alpha
Helix 32	AD5	H	105	109	Right-handed 310

There are 19 sheets in PDB entry 8P12. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	4	5	first strand
Strand 2	R	10	11	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	178	181	first strand
Strand 2	R	186	189	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	185	191	first strand
Strand 2	A	194	200	anti-parallel
Strand 3	A	34	40	parallel
Strand 4	A	220	226	parallel
Strand 5	A	263	269	parallel
Strand 6	A	319	323	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	51	first strand
Strand 2	B	336	339	anti-parallel
Strand 3	B	327	331	anti-parallel
Strand 4	B	315	320	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	63	first strand
Strand 2	B	69	74	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	89	94	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	102	105	first strand
Strand 2	B	111	115	anti-parallel
Strand 3	B	120	125	anti-parallel
Strand 4	B	134	140	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	151	first strand
Strand 2	B	156	161	anti-parallel
Strand 3	B	166	170	anti-parallel
Strand 4	B	176	180	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	189	192	first strand
Strand 2	B	198	202	anti-parallel
Strand 3	B	208	212	anti-parallel
Strand 4	B	221	222	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	231	234	first strand
Strand 2	B	240	244	anti-parallel
Strand 3	B	249	254	anti-parallel
Strand 4	B	260	265	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	273	278	first strand
Strand 2	B	284	289	anti-parallel
Strand 3	B	293	298	anti-parallel
Strand 4	B	303	309	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	23	26	first strand
Strand 2	L	39	44	anti-parallel
Strand 3	L	94	99	anti-parallel
Strand 4	L	86	91	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	29	32	first strand
Strand 2	L	126	130	parallel
Strand 3	L	108	114	anti-parallel
Strand 4	L	57	62	anti-parallel
Strand 5	L	69	73	anti-parallel
Strand 6	L	77	78	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	29	32	first strand
Strand 2	L	126	130	parallel
Strand 3	L	108	114	anti-parallel
Strand 4	L	121	122	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	138	142	first strand
Strand 2	L	154	163	anti-parallel
Strand 3	L	197	205	anti-parallel
Strand 4	L	183	184	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	177	179	first strand
Strand 2	L	169	174	anti-parallel
Strand 3	L	215	221	anti-parallel
Strand 4	L	229	234	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	22	26	first strand
Strand 2	H	37	44	anti-parallel
Strand 3	H	96	101	anti-parallel
Strand 4	H	86	91	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	30	31	first strand
Strand 2	H	132	136	parallel
Strand 3	H	110	117	anti-parallel
Strand 4	H	52	58	anti-parallel
Strand 5	H	65	70	anti-parallel
Strand 6	H	76	78	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	146	149	first strand
Strand 2	H	160	170	anti-parallel
Strand 3	H	199	209	anti-parallel
Strand 4	H	189	196	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	176	179	first strand
Strand 2	H	219	224	anti-parallel
Strand 3	H	229	234	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8P12

Analysis of interatomic Contacts of Structural Units in PDB entry:
8P12