Analysis of interatomic Contacts of Structural Units in PDB entry:
8P19


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8P19 entry

There is 1 chain in PDB entry 8P19 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 149TRP 521
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 8P19. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
150 155Right-handed 310
Helix 2
AA2
A
170 182Right-handed alpha
Helix 3
AA3
A
183 192Right-handed alpha
Helix 4
AA4
A
196 201Right-handed alpha
Helix 5
AA5
A
205 228Right-handed alpha
Helix 6
AA6
A
235 244Right-handed alpha
Helix 7
AA7
A
255 273Right-handed alpha
Helix 8
AA8
A
286 293Right-handed alpha
Helix 9
AA9
A
325 336Right-handed alpha
Helix 10
AB1
A
395 398Right-handed 310
Helix 11
AB2
A
451 460Right-handed alpha
Helix 12
AB3
A
478 482Right-handed 310
Helix 13
AB4
A
495 499Right-handed 310
Helix 14
AB5
A
500 520Right-handed alpha
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There are 5 sheets in PDB entry 8P19. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
163 164first strand
Strand 2
A
232 233parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
305 313first strand
Strand 2
A
294 302anti-parallel
Strand 3
A
353 358anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
315 319first strand
Strand 2
A
362 368parallel
Strand 3
A
466 475anti-parallel
Strand 4
A
409 419anti-parallel
Strand 5
A
391 393anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
315 319first strand
Strand 2
A
362 368parallel
Strand 3
A
466 475anti-parallel
Strand 4
A
409 419anti-parallel
Strand 5
A
426 433anti-parallel
Strand 6
A
438 443anti-parallel
Strand 7
A
446 449anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
370 372first strand
Strand 2
A
379 381anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il