Analysis of interatomic Contacts of Structural Units in PDB entry:
8P1I

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8P1I entry

There are 3 chains in PDB entry 8P1I (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	SER 1033
B	MET 1	LYS 1034
C	MET 1	SER 1033

There are124 helices in PDB entry 8P1I. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	1	7	Right-handed alpha
Helix 2	AA2	A	8	30	Right-handed alpha
Helix 3	AA3	A	53	61	Right-handed alpha
Helix 4	AA4	A	61	67	Right-handed alpha
Helix 5	AA5	A	99	115	Right-handed alpha
Helix 6	AA6	A	116	118	Right-handed 310
Helix 7	AA7	A	119	126	Right-handed alpha
Helix 8	AA8	A	150	162	Right-handed alpha
Helix 9	AA9	A	162	169	Right-handed alpha
Helix 10	AB1	A	189	196	Right-handed alpha
Helix 11	AB2	A	199	211	Right-handed alpha
Helix 12	AB3	A	242	247	Right-handed alpha
Helix 13	AB4	A	263	265	Right-handed 310
Helix 14	AB5	A	298	312	Right-handed alpha
Helix 15	AB6	A	313	317	Right-handed 310
Helix 16	AB7	A	329	360	Right-handed alpha
Helix 17	AB8	A	361	387	Right-handed alpha
Helix 18	AB9	A	391	406	Right-handed alpha
Helix 19	AC1	A	406	423	Right-handed alpha
Helix 20	AC2	A	426	451	Right-handed alpha
Helix 21	AC3	A	452	453	Right-handed 310
Helix 22	AC4	A	454	459	Right-handed 310
Helix 23	AC5	A	461	496	Right-handed alpha
Helix 24	AC6	A	510	537	Right-handed alpha
Helix 25	AC7	A	539	558	Right-handed alpha
Helix 26	AC8	A	582	601	Right-handed alpha
Helix 27	AC9	A	632	636	Right-handed 310
Helix 28	AD1	A	642	655	Right-handed alpha
Helix 29	AD2	A	691	706	Right-handed alpha
Helix 30	AD3	A	731	738	Right-handed alpha
Helix 31	AD4	A	741	755	Right-handed alpha
Helix 32	AD5	A	776	779	Right-handed 310
Helix 33	AD6	A	781	787	Right-handed 310
Helix 34	AD7	A	837	848	Right-handed alpha
Helix 35	AD8	A	859	868	Right-handed alpha
Helix 36	AD9	A	871	892	Right-handed alpha
Helix 37	AE1	A	896	902	Right-handed alpha
Helix 38	AE2	A	903	919	Right-handed alpha
Helix 39	AE3	A	923	953	Right-handed alpha
Helix 40	AE4	A	963	968	Right-handed alpha
Helix 41	AE5	A	971	985	Right-handed alpha
Helix 42	AE6	A	985	990	Right-handed alpha
Helix 43	AE7	A	995	1016	Right-handed alpha
Helix 44	AE8	A	1016	1032	Right-handed alpha
Helix 45	AE9	B	2	7	Right-handed alpha
Helix 46	AF1	B	8	29	Right-handed alpha
Helix 47	AF2	B	53	61	Right-handed alpha
Helix 48	AF3	B	61	67	Right-handed alpha
Helix 49	AF4	B	99	114	Right-handed alpha
Helix 50	AF5	B	119	126	Right-handed alpha
Helix 51	AF6	B	150	161	Right-handed alpha
Helix 52	AF7	B	162	169	Right-handed alpha
Helix 53	AF8	B	189	196	Right-handed alpha
Helix 54	AF9	B	199	210	Right-handed alpha
Helix 55	AG1	B	242	248	Right-handed alpha
Helix 56	AG2	B	298	313	Right-handed alpha
Helix 57	AG3	B	314	317	Right-handed 310
Helix 58	AG4	B	329	360	Right-handed alpha
Helix 59	AG5	B	361	386	Right-handed alpha
Helix 60	AG6	B	391	424	Right-handed alpha
Helix 61	AG7	B	426	454	Right-handed alpha
Helix 62	AG8	B	455	459	Right-handed 310
Helix 63	AG9	B	461	497	Right-handed alpha
Helix 64	AH1	B	510	535	Right-handed alpha
Helix 65	AH2	B	536	558	Right-handed alpha
Helix 66	AH3	B	582	600	Right-handed alpha
Helix 67	AH4	B	632	636	Right-handed 310
Helix 68	AH5	B	638	641	Right-handed 310
Helix 69	AH6	B	642	655	Right-handed alpha
Helix 70	AH7	B	689	706	Right-handed alpha
Helix 71	AH8	B	731	738	Right-handed alpha
Helix 72	AH9	B	741	754	Right-handed alpha
Helix 73	AI1	B	776	779	Right-handed 310
Helix 74	AI2	B	781	787	Right-handed 310
Helix 75	AI3	B	835	848	Right-handed alpha
Helix 76	AI4	B	860	870	Right-handed alpha
Helix 77	AI5	B	871	892	Right-handed alpha
Helix 78	AI6	B	897	902	Right-handed alpha
Helix 79	AI7	B	903	919	Right-handed alpha
Helix 80	AI8	B	923	955	Right-handed alpha
Helix 81	AI9	B	958	991	Right-handed alpha
Helix 82	AJ1	B	995	1032	Right-handed alpha
Helix 83	AJ2	C	2	7	Right-handed alpha
Helix 84	AJ3	C	8	30	Right-handed alpha
Helix 85	AJ4	C	53	61	Right-handed alpha
Helix 86	AJ5	C	61	69	Right-handed alpha
Helix 87	AJ6	C	99	115	Right-handed alpha
Helix 88	AJ7	C	116	118	Right-handed 310
Helix 89	AJ8	C	119	126	Right-handed alpha
Helix 90	AJ9	C	150	162	Right-handed alpha
Helix 91	AK1	C	162	168	Right-handed alpha
Helix 92	AK2	C	189	196	Right-handed alpha
Helix 93	AK3	C	199	211	Right-handed alpha
Helix 94	AK4	C	242	248	Right-handed alpha
Helix 95	AK5	C	298	314	Right-handed alpha
Helix 96	AK6	C	315	317	Right-handed 310
Helix 97	AK7	C	329	360	Right-handed alpha
Helix 98	AK8	C	361	370	Right-handed alpha
Helix 99	AK9	C	370	386	Right-handed alpha
Helix 100	AL1	C	391	403	Right-handed alpha
Helix 101	AL2	C	406	424	Right-handed alpha
Helix 102	AL3	C	426	452	Right-handed alpha
Helix 103	AL4	C	454	459	Right-handed 310
Helix 104	AL5	C	460	496	Right-handed alpha
Helix 105	AL6	C	510	534	Right-handed alpha
Helix 106	AL7	C	537	558	Right-handed alpha
Helix 107	AL8	C	582	600	Right-handed alpha
Helix 108	AL9	C	632	636	Right-handed 310
Helix 109	AM1	C	638	641	Right-handed 310
Helix 110	AM2	C	642	655	Right-handed alpha
Helix 111	AM3	C	690	706	Right-handed alpha
Helix 112	AM4	C	731	738	Right-handed alpha
Helix 113	AM5	C	741	754	Right-handed alpha
Helix 114	AM6	C	776	779	Right-handed 310
Helix 115	AM7	C	781	787	Right-handed 310
Helix 116	AM8	C	835	848	Right-handed alpha
Helix 117	AM9	C	860	892	Right-handed alpha
Helix 118	AN1	C	895	902	Right-handed alpha
Helix 119	AN2	C	903	919	Right-handed alpha
Helix 120	AN3	C	923	955	Right-handed alpha
Helix 121	AN4	C	958	985	Right-handed alpha
Helix 122	AN5	C	985	990	Right-handed alpha
Helix 123	AN6	C	995	1016	Right-handed alpha
Helix 124	AN7	C	1016	1032	Right-handed alpha

There are 24 sheets in PDB entry 8P1I. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	128	130	first strand
Strand 2	A	42	48	anti-parallel
Strand 3	A	87	94	anti-parallel
Strand 4	A	75	83	anti-parallel
Strand 5	A	814	818	anti-parallel
Strand 6	A	821	830	anti-parallel
Strand 7	A	712	717	anti-parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	128	130	first strand
Strand 2	A	42	48	anti-parallel
Strand 3	A	87	94	anti-parallel
Strand 4	A	75	83	anti-parallel
Strand 5	A	814	818	anti-parallel
Strand 6	A	821	830	anti-parallel
Strand 7	A	681	684	anti-parallel
Strand 8	A	857	858	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	172	177	first strand
Strand 2	A	287	293	anti-parallel
Strand 3	A	138	144	anti-parallel
Strand 4	A	321	328	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	268	272	first strand
Strand 2	A	182	188	anti-parallel
Strand 3	A	766	774	parallel
Strand 4	A	756	763	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	215	219	first strand
Strand 2	A	232	235	anti-parallel
Strand 3	B	723	730	parallel
Strand 4	B	804	811	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	250	253	first strand
Strand 2	A	259	261	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	284	285	first strand
Strand 2	A	278	281	anti-parallel
Strand 3	A	605	612	anti-parallel
Strand 4	A	623	630	anti-parallel
Strand 5	A	570	576	anti-parallel
Strand 6	A	663	665	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	804	811	first strand
Strand 2	A	723	730	anti-parallel
Strand 3	C	232	235	parallel
Strand 4	C	215	219	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	789	791	first strand
Strand 2	A	797	799	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	127	131	first strand
Strand 2	B	42	48	anti-parallel
Strand 3	B	87	94	anti-parallel
Strand 4	B	75	83	anti-parallel
Strand 5	B	814	818	anti-parallel
Strand 6	B	821	822	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	172	178	first strand
Strand 2	B	284	293	anti-parallel
Strand 3	B	138	144	anti-parallel
Strand 4	B	321	328	anti-parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	172	178	first strand
Strand 2	B	284	293	anti-parallel
Strand 3	B	278	281	anti-parallel
Strand 4	B	605	612	anti-parallel
Strand 5	B	624	630	anti-parallel
Strand 6	B	570	574	anti-parallel
Strand 7	B	663	666	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	266	272	first strand
Strand 2	B	182	188	anti-parallel
Strand 3	B	767	774	parallel
Strand 4	B	756	762	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	218	219	first strand
Strand 2	B	232	235	anti-parallel
Strand 3	C	723	730	parallel
Strand 4	C	804	811	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	250	253	first strand
Strand 2	B	259	261	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	712	717	first strand
Strand 2	B	825	830	anti-parallel
Strand 3	B	679	682	anti-parallel
Strand 4	B	857	858	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	789	791	first strand
Strand 2	B	797	799	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	127	131	first strand
Strand 2	C	42	48	anti-parallel
Strand 3	C	87	94	anti-parallel
Strand 4	C	75	83	anti-parallel
Strand 5	C	814	818	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	172	177	first strand
Strand 2	C	287	293	anti-parallel
Strand 3	C	138	144	anti-parallel
Strand 4	C	321	328	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	266	272	first strand
Strand 2	C	182	188	anti-parallel
Strand 3	C	766	774	parallel
Strand 4	C	756	763	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	250	253	first strand
Strand 2	C	259	261	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	278	281	first strand
Strand 2	C	605	612	anti-parallel
Strand 3	C	623	630	anti-parallel
Strand 4	C	570	576	anti-parallel
Strand 5	C	661	665	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	712	717	first strand
Strand 2	C	823	830	anti-parallel
Strand 3	C	679	684	anti-parallel
Strand 4	C	857	858	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	789	791	first strand
Strand 2	C	797	799	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8P1I

Analysis of interatomic Contacts of Structural Units in PDB entry:
8P1I