Analysis of interatomic Contacts of Structural Units in PDB entry:
8P1J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8P1J entry

There is 1 chain in PDB entry 8P1J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 226ARG 1600
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 62 helices in PDB entry 8P1J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
239 252Right-handed alpha
Helix 2
AA2
A
263 279Right-handed alpha
Helix 3
AA3
A
306 323Right-handed alpha
Helix 4
AA4
A
328 343Right-handed alpha
Helix 5
AA5
A
345 353Right-handed alpha
Helix 6
AA6
A
379 391Right-handed alpha
Helix 7
AA7
A
409 429Right-handed alpha
Helix 8
AA8
A
449 463Right-handed alpha
Helix 9
AA9
A
463 468Right-handed alpha
Helix 10
AB1
A
470 490Right-handed alpha
Helix 11
AB2
A
539 541Right-handed 310
Helix 12
AB3
A
563 572Right-handed alpha
Helix 13
AB4
A
572 593Right-handed alpha
Helix 14
AB5
A
597 614Right-handed alpha
Helix 15
AB6
A
616 634Right-handed alpha
Helix 16
AB7
A
639 647Right-handed alpha
Helix 17
AB8
A
654 674Right-handed alpha
Helix 18
AB9
A
712 725Right-handed alpha
Helix 19
AC1
A
726 727Right-handed 310
Helix 20
AC2
A
728 732Right-handed 310
Helix 21
AC3
A
736 760Right-handed alpha
Helix 22
AC4
A
760 767Right-handed alpha
Helix 23
AC5
A
769 777Right-handed alpha
Helix 24
AC6
A
786 802Right-handed alpha
Helix 25
AC7
A
804 814Right-handed alpha
Helix 26
AC8
A
820 824Right-handed 310
Helix 27
AC9
A
848 859Right-handed alpha
Helix 28
AD1
A
864 872Right-handed alpha
Helix 29
AD2
A
883 887Right-handed 310
Helix 30
AD3
A
898 917Right-handed alpha
Helix 31
AD4
A
918 920Right-handed 310
Helix 32
AD5
A
927 931Right-handed 310
Helix 33
AD6
A
932 947Right-handed alpha
Helix 34
AD7
A
983 992Right-handed alpha
Helix 35
AD8
A
999 1012Right-handed alpha
Helix 36
AD9
A
1020 1030Right-handed alpha
Helix 37
AE1
A
1034 1044Right-handed alpha
Helix 38
AE2
A
1061 1084Right-handed alpha
Helix 39
AE3
A
1114 1126Right-handed alpha
Helix 40
AE4
A
1128 1133Right-handed 310
Helix 41
AE5
A
1137 1152Right-handed alpha
Helix 42
AE6
A
1170 1175Right-handed alpha
Helix 43
AE7
A
1184 1192Right-handed alpha
Helix 44
AE8
A
1200 1218Right-handed alpha
Helix 45
AE9
A
1221 1241Right-handed alpha
Helix 46
AF1
A
1249 1253Right-handed 310
Helix 47
AF2
A
1262 1266Right-handed 310
Helix 48
AF3
A
1272 1279Right-handed alpha
Helix 49
AF4
A
1282 1300Right-handed alpha
Helix 50
AF5
A
1301 1318Right-handed alpha
Helix 51
AF6
A
1354 1365Right-handed alpha
Helix 52
AF7
A
1366 1370Right-handed 310
Helix 53
AF8
A
1375 1388Right-handed alpha
Helix 54
AF9
A
1389 1397Right-handed alpha
Helix 55
AG1
A
1400 1409Right-handed alpha
Helix 56
AG2
A
1425 1439Right-handed alpha
Helix 57
AG3
A
1443 1454Right-handed alpha
Helix 58
AG4
A
1502 1512Right-handed alpha
Helix 59
AG5
A
1514 1525Right-handed alpha
Helix 60
AG6
A
1531 1545Right-handed alpha
Helix 61
AG7
A
1554 1568Right-handed alpha
Helix 62
AG8
A
1581 1592Right-handed alpha
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There are 13 sheets in PDB entry 8P1J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
260 261first strand
Strand 2
A
637 638anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
284 285first strand
Strand 2
A
404 405parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
296 297first strand
Strand 2
A
536 537anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
499 503first strand
Strand 2
A
508 512anti-parallel
Strand 3
A
525 532anti-parallel
Strand 4
A
553 557anti-parallel
Strand 5
A
543 548anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
499 503first strand
Strand 2
A
508 512anti-parallel
Strand 3
A
525 532anti-parallel
Strand 4
A
560 562anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
701 702first strand
Strand 2
A
709 710anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
832 837first strand
Strand 2
A
843 847anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
895 897first strand
Strand 2
A
877 881anti-parallel
Strand 3
A
1014 1018parallel
Strand 4
A
1049 1053anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
949 955first strand
Strand 2
A
958 971anti-parallel
Strand 3
A
1099 1109anti-parallel
Strand 4
A
1090 1096anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
949 955first strand
Strand 2
A
958 971anti-parallel
Strand 3
A
1163 1165anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1417 1419first strand
Strand 2
A
1422 1424anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1485 1486first strand
Strand 2
A
1574 1575anti-parallel
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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1489 1491first strand
Strand 2
A
1569 1571anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il