Analysis of interatomic Contacts of Structural Units in PDB entry:
8P1K


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8P1K entry

There is 1 chain in PDB entry 8P1K (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ARG 1600
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 71 helices in PDB entry 8P1K. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1 13Right-handed alpha
Helix 2
AA2
A
20 47Right-handed alpha
Helix 3
AA3
A
56 65Right-handed alpha
Helix 4
AA4
A
67 75Right-handed alpha
Helix 5
AA5
A
87 94Right-handed alpha
Helix 6
AA6
A
116 145Right-handed alpha
Helix 7
AA7
A
167 172Right-handed alpha
Helix 8
AA8
A
176 198Right-handed alpha
Helix 9
AA9
A
200 214Right-handed alpha
Helix 10
AB1
A
239 252Right-handed alpha
Helix 11
AB2
A
263 281Right-handed alpha
Helix 12
AB3
A
306 323Right-handed alpha
Helix 13
AB4
A
328 343Right-handed alpha
Helix 14
AB5
A
345 354Right-handed alpha
Helix 15
AB6
A
379 391Right-handed alpha
Helix 16
AB7
A
409 429Right-handed alpha
Helix 17
AB8
A
449 463Right-handed alpha
Helix 18
AB9
A
463 468Right-handed alpha
Helix 19
AC1
A
470 490Right-handed alpha
Helix 20
AC2
A
563 572Right-handed alpha
Helix 21
AC3
A
572 593Right-handed alpha
Helix 22
AC4
A
597 614Right-handed alpha
Helix 23
AC5
A
616 634Right-handed alpha
Helix 24
AC6
A
639 647Right-handed alpha
Helix 25
AC7
A
654 674Right-handed alpha
Helix 26
AC8
A
712 726Right-handed alpha
Helix 27
AC9
A
727 732Right-handed 310
Helix 28
AD1
A
736 760Right-handed alpha
Helix 29
AD2
A
760 767Right-handed alpha
Helix 30
AD3
A
769 777Right-handed alpha
Helix 31
AD4
A
786 802Right-handed alpha
Helix 32
AD5
A
804 814Right-handed alpha
Helix 33
AD6
A
820 824Right-handed 310
Helix 34
AD7
A
848 859Right-handed alpha
Helix 35
AD8
A
864 872Right-handed alpha
Helix 36
AD9
A
883 887Right-handed 310
Helix 37
AE1
A
898 917Right-handed alpha
Helix 38
AE2
A
918 920Right-handed 310
Helix 39
AE3
A
927 931Right-handed 310
Helix 40
AE4
A
932 947Right-handed alpha
Helix 41
AE5
A
983 992Right-handed alpha
Helix 42
AE6
A
999 1012Right-handed alpha
Helix 43
AE7
A
1020 1030Right-handed alpha
Helix 44
AE8
A
1034 1044Right-handed alpha
Helix 45
AE9
A
1061 1084Right-handed alpha
Helix 46
AF1
A
1114 1126Right-handed alpha
Helix 47
AF2
A
1128 1133Right-handed 310
Helix 48
AF3
A
1137 1153Right-handed alpha
Helix 49
AF4
A
1170 1175Right-handed alpha
Helix 50
AF5
A
1184 1192Right-handed alpha
Helix 51
AF6
A
1200 1218Right-handed alpha
Helix 52
AF7
A
1221 1241Right-handed alpha
Helix 53
AF8
A
1249 1253Right-handed 310
Helix 54
AF9
A
1257 1261Right-handed 310
Helix 55
AG1
A
1262 1266Right-handed 310
Helix 56
AG2
A
1272 1279Right-handed alpha
Helix 57
AG3
A
1282 1300Right-handed alpha
Helix 58
AG4
A
1301 1318Right-handed alpha
Helix 59
AG5
A
1354 1365Right-handed alpha
Helix 60
AG6
A
1366 1370Right-handed 310
Helix 61
AG7
A
1375 1388Right-handed alpha
Helix 62
AG8
A
1389 1397Right-handed alpha
Helix 63
AG9
A
1400 1409Right-handed alpha
Helix 64
AH1
A
1410 1414Right-handed 310
Helix 65
AH2
A
1425 1439Right-handed alpha
Helix 66
AH3
A
1443 1454Right-handed alpha
Helix 67
AH4
A
1502 1512Right-handed alpha
Helix 68
AH5
A
1514 1525Right-handed alpha
Helix 69
AH6
A
1531 1546Right-handed alpha
Helix 70
AH7
A
1554 1568Right-handed alpha
Helix 71
AH8
A
1581 1592Right-handed alpha
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There are 12 sheets in PDB entry 8P1K. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
98 102first strand
Strand 2
A
105 113anti-parallel
Strand 3
A
153 161parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
260 261first strand
Strand 2
A
637 638anti-parallel
Strand 3
A
1163 1165anti-parallel
Strand 4
A
958 971anti-parallel
Strand 5
A
1099 1109anti-parallel
Strand 6
A
1090 1096anti-parallel
Strand 7
A
924 925parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
260 261first strand
Strand 2
A
637 638anti-parallel
Strand 3
A
1163 1165anti-parallel
Strand 4
A
958 971anti-parallel
Strand 5
A
949 955anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
296 297first strand
Strand 2
A
536 537anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
499 503first strand
Strand 2
A
508 512anti-parallel
Strand 3
A
525 532anti-parallel
Strand 4
A
553 556anti-parallel
Strand 5
A
545 548anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
499 503first strand
Strand 2
A
508 512anti-parallel
Strand 3
A
525 532anti-parallel
Strand 4
A
560 562anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
701 702first strand
Strand 2
A
709 710anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
832 837first strand
Strand 2
A
843 847anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
895 897first strand
Strand 2
A
877 881anti-parallel
Strand 3
A
1014 1018parallel
Strand 4
A
1049 1053anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1417 1419first strand
Strand 2
A
1422 1424anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1485 1486first strand
Strand 2
A
1574 1575anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1489 1491first strand
Strand 2
A
1569 1571anti-parallel
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