Analysis of interatomic Contacts of Structural Units in PDB entry:
8P1L


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8P1L entry

There is 1 chain in PDB entry 8P1L (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1TYR 2151
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 94 helices in PDB entry 8P1L. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1 14Right-handed alpha
Helix 2
AA2
A
20 47Right-handed alpha
Helix 3
AA3
A
56 65Right-handed alpha
Helix 4
AA4
A
67 76Right-handed alpha
Helix 5
AA5
A
87 94Right-handed alpha
Helix 6
AA6
A
116 145Right-handed alpha
Helix 7
AA7
A
167 172Right-handed alpha
Helix 8
AA8
A
176 198Right-handed alpha
Helix 9
AA9
A
200 202Right-handed 310
Helix 10
AB1
A
203 215Right-handed alpha
Helix 11
AB2
A
239 251Right-handed alpha
Helix 12
AB3
A
263 282Right-handed alpha
Helix 13
AB4
A
306 323Right-handed alpha
Helix 14
AB5
A
328 343Right-handed alpha
Helix 15
AB6
A
345 353Right-handed alpha
Helix 16
AB7
A
374 378Right-handed 310
Helix 17
AB8
A
379 391Right-handed alpha
Helix 18
AB9
A
409 427Right-handed alpha
Helix 19
AC1
A
450 458Right-handed alpha
Helix 20
AC2
A
458 463Right-handed alpha
Helix 21
AC3
A
463 468Right-handed alpha
Helix 22
AC4
A
470 490Right-handed alpha
Helix 23
AC5
A
504 507Right-handed 310
Helix 24
AC6
A
563 572Right-handed alpha
Helix 25
AC7
A
572 593Right-handed alpha
Helix 26
AC8
A
597 613Right-handed alpha
Helix 27
AC9
A
617 630Right-handed alpha
Helix 28
AD1
A
631 633Right-handed 310
Helix 29
AD2
A
640 648Right-handed alpha
Helix 30
AD3
A
654 674Right-handed alpha
Helix 31
AD4
A
712 726Right-handed alpha
Helix 32
AD5
A
734 759Right-handed alpha
Helix 33
AD6
A
760 767Right-handed alpha
Helix 34
AD7
A
769 777Right-handed alpha
Helix 35
AD8
A
786 802Right-handed alpha
Helix 36
AD9
A
804 814Right-handed alpha
Helix 37
AE1
A
847 857Right-handed alpha
Helix 38
AE2
A
864 872Right-handed alpha
Helix 39
AE3
A
898 917Right-handed alpha
Helix 40
AE4
A
932 947Right-handed alpha
Helix 41
AE5
A
983 992Right-handed alpha
Helix 42
AE6
A
999 1012Right-handed alpha
Helix 43
AE7
A
1020 1029Right-handed alpha
Helix 44
AE8
A
1034 1044Right-handed alpha
Helix 45
AE9
A
1061 1084Right-handed alpha
Helix 46
AF1
A
1114 1127Right-handed alpha
Helix 47
AF2
A
1128 1132Right-handed 310
Helix 48
AF3
A
1137 1153Right-handed alpha
Helix 49
AF4
A
1168 1179Right-handed alpha
Helix 50
AF5
A
1184 1194Right-handed alpha
Helix 51
AF6
A
1201 1218Right-handed alpha
Helix 52
AF7
A
1221 1240Right-handed alpha
Helix 53
AF8
A
1249 1254Right-handed alpha
Helix 54
AF9
A
1262 1266Right-handed 310
Helix 55
AG1
A
1273 1278Right-handed alpha
Helix 56
AG2
A
1282 1299Right-handed alpha
Helix 57
AG3
A
1301 1319Right-handed alpha
Helix 58
AG4
A
1354 1365Right-handed alpha
Helix 59
AG5
A
1366 1370Right-handed 310
Helix 60
AG6
A
1375 1388Right-handed alpha
Helix 61
AG7
A
1389 1397Right-handed alpha
Helix 62
AG8
A
1400 1409Right-handed alpha
Helix 63
AG9
A
1425 1440Right-handed alpha
Helix 64
AH1
A
1443 1456Right-handed alpha
Helix 65
AH2
A
1458 1469Right-handed alpha
Helix 66
AH3
A
1501 1511Right-handed alpha
Helix 67
AH4
A
1514 1525Right-handed alpha
Helix 68
AH5
A
1527 1529Right-handed 310
Helix 69
AH6
A
1530 1545Right-handed alpha
Helix 70
AH7
A
1552 1564Right-handed alpha
Helix 71
AH8
A
1581 1592Right-handed alpha
Helix 72
AH9
A
1602 1606Right-handed 310
Helix 73
AI1
A
1621 1643Right-handed alpha
Helix 74
AI2
A
1645 1652Right-handed alpha
Helix 75
AI3
A
1660 1671Right-handed alpha
Helix 76
AI4
A
1678 1688Right-handed alpha
Helix 77
AI5
A
1693 1702Right-handed alpha
Helix 78
AI6
A
1759 1778Right-handed alpha
Helix 79
AI7
A
1820 1823Right-handed 310
Helix 80
AI8
A
1867 1871Right-handed 310
Helix 81
AI9
A
1888 1895Right-handed alpha
Helix 82
AJ1
A
1896 1903Right-handed alpha
Helix 83
AJ2
A
1909 1917Right-handed alpha
Helix 84
AJ3
A
1924 1937Right-handed alpha
Helix 85
AJ4
A
2036 2042Right-handed alpha
Helix 86
AJ5
A
2045 2050Right-handed 310
Helix 87
AJ6
A
2054 2069Right-handed alpha
Helix 88
AJ7
A
2075 2079Right-handed 310
Helix 89
AJ8
A
2080 2091Right-handed alpha
Helix 90
AJ9
A
2095 2100Right-handed alpha
Helix 91
AK1
A
2101 2116Right-handed alpha
Helix 92
AK2
A
2119 2123Right-handed 310
Helix 93
AK3
A
2130 2142Right-handed alpha
Helix 94
AK4
A
2145 2151Right-handed alpha
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There are 19 sheets in PDB entry 8P1L. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
98 102first strand
Strand 2
A
105 113anti-parallel
Strand 3
A
153 161parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
260 261first strand
Strand 2
A
637 638anti-parallel
Strand 3
A
1163 1165anti-parallel
Strand 4
A
959 970anti-parallel
Strand 5
A
949 953anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
260 261first strand
Strand 2
A
637 638anti-parallel
Strand 3
A
1163 1165anti-parallel
Strand 4
A
959 970anti-parallel
Strand 5
A
1102 1109anti-parallel
Strand 6
A
1091 1092anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
284 285first strand
Strand 2
A
404 405parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
499 502first strand
Strand 2
A
509 512anti-parallel
Strand 3
A
525 532anti-parallel
Strand 4
A
553 556anti-parallel
Strand 5
A
545 548anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
499 502first strand
Strand 2
A
509 512anti-parallel
Strand 3
A
525 532anti-parallel
Strand 4
A
560 562anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
701 702first strand
Strand 2
A
709 710anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
895 897first strand
Strand 2
A
877 881anti-parallel
Strand 3
A
1014 1018parallel
Strand 4
A
1049 1053anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1095 1096first strand
Strand 2
A
1099 1100anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1417 1419first strand
Strand 2
A
1422 1424anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1475 1476first strand
Strand 2
A
1598 1599anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1486 1489first strand
Strand 2
A
1571 1574anti-parallel
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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1658 1659first strand
Strand 2
A
1653 1655anti-parallel
Strand 3
A
1872 1873anti-parallel
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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1717 1719first strand
Strand 2
A
1724 1726anti-parallel
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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1740 1741first strand
Strand 2
A
1753 1755anti-parallel
Strand 3
A
1816 1818parallel
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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1744 1745first strand
Strand 2
A
1750 1751anti-parallel
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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1784 1786first strand
Strand 2
A
1810 1812anti-parallel
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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1796 1797first strand
Strand 2
A
1800 1801anti-parallel
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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1833 1837first strand
Strand 2
A
1842 1846anti-parallel
Strand 3
A
1854 1858anti-parallel
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