Analysis of interatomic Contacts of Structural Units in PDB entry:
8P1M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8P1M entry

There are 2 chains in PDB entry 8P1M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 226ARG 1600
D
 A 2 G 6
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 57 helices in PDB entry 8P1M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
239 251Right-handed alpha
Helix 2
AA2
A
263 282Right-handed alpha
Helix 3
AA3
A
306 324Right-handed alpha
Helix 4
AA4
A
328 343Right-handed alpha
Helix 5
AA5
A
345 354Right-handed alpha
Helix 6
AA6
A
379 390Right-handed alpha
Helix 7
AA7
A
409 427Right-handed alpha
Helix 8
AA8
A
449 458Right-handed alpha
Helix 9
AA9
A
458 463Right-handed alpha
Helix 10
AB1
A
463 468Right-handed alpha
Helix 11
AB2
A
470 489Right-handed alpha
Helix 12
AB3
A
572 592Right-handed alpha
Helix 13
AB4
A
597 614Right-handed alpha
Helix 14
AB5
A
616 634Right-handed alpha
Helix 15
AB6
A
639 648Right-handed alpha
Helix 16
AB7
A
656 675Right-handed alpha
Helix 17
AB8
A
712 726Right-handed alpha
Helix 18
AB9
A
733 758Right-handed alpha
Helix 19
AC1
A
760 765Right-handed alpha
Helix 20
AC2
A
770 775Right-handed alpha
Helix 21
AC3
A
787 798Right-handed alpha
Helix 22
AC4
A
804 815Right-handed alpha
Helix 23
AC5
A
848 859Right-handed alpha
Helix 24
AC6
A
866 873Right-handed alpha
Helix 25
AC7
A
898 917Right-handed alpha
Helix 26
AC8
A
930 947Right-handed alpha
Helix 27
AC9
A
983 992Right-handed alpha
Helix 28
AD1
A
999 1012Right-handed alpha
Helix 29
AD2
A
1020 1028Right-handed alpha
Helix 30
AD3
A
1034 1042Right-handed alpha
Helix 31
AD4
A
1062 1084Right-handed alpha
Helix 32
AD5
A
1113 1127Right-handed alpha
Helix 33
AD6
A
1128 1134Right-handed 310
Helix 34
AD7
A
1137 1152Right-handed alpha
Helix 35
AD8
A
1168 1175Right-handed alpha
Helix 36
AD9
A
1184 1190Right-handed alpha
Helix 37
AE1
A
1200 1218Right-handed alpha
Helix 38
AE2
A
1221 1241Right-handed alpha
Helix 39
AE3
A
1249 1254Right-handed alpha
Helix 40
AE4
A
1257 1261Right-handed 310
Helix 41
AE5
A
1262 1266Right-handed 310
Helix 42
AE6
A
1272 1279Right-handed alpha
Helix 43
AE7
A
1282 1299Right-handed alpha
Helix 44
AE8
A
1302 1304Right-handed 310
Helix 45
AE9
A
1305 1319Right-handed alpha
Helix 46
AF1
A
1356 1365Right-handed alpha
Helix 47
AF2
A
1366 1370Right-handed 310
Helix 48
AF3
A
1375 1388Right-handed alpha
Helix 49
AF4
A
1391 1396Right-handed alpha
Helix 50
AF5
A
1400 1412Right-handed alpha
Helix 51
AF6
A
1425 1439Right-handed alpha
Helix 52
AF7
A
1443 1454Right-handed alpha
Helix 53
AF8
A
1502 1511Right-handed alpha
Helix 54
AF9
A
1514 1525Right-handed alpha
Helix 55
AG1
A
1530 1546Right-handed alpha
Helix 56
AG2
A
1555 1568Right-handed alpha
Helix 57
AG3
A
1581 1592Right-handed alpha
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There are 8 sheets in PDB entry 8P1M. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
260 261first strand
Strand 2
A
637 638anti-parallel
Strand 3
A
1163 1165anti-parallel
Strand 4
A
968 971anti-parallel
Strand 5
A
1099 1102anti-parallel
Strand 6
A
1094 1096anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
499 503first strand
Strand 2
A
508 512anti-parallel
Strand 3
A
525 532anti-parallel
Strand 4
A
553 556anti-parallel
Strand 5
A
545 548anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
499 503first strand
Strand 2
A
508 512anti-parallel
Strand 3
A
525 532anti-parallel
Strand 4
A
560 562anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
701 702first strand
Strand 2
A
709 710anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
832 837first strand
Strand 2
A
843 847anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
892 897first strand
Strand 2
A
877 884anti-parallel
Strand 3
A
1014 1018parallel
Strand 4
A
1049 1053anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
949 953first strand
Strand 2
A
959 966anti-parallel
Strand 3
A
1105 1109anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1486 1491first strand
Strand 2
A
1569 1574anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il