Analysis of interatomic Contacts of Structural Units in PDB entry:
8P1P


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8P1P entry

There are 2 chains in PDB entry 8P1P (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 149SER 700
B
 PRO 151GLU 696
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 8P1P. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
150 155Right-handed 310
Helix 2
AA2
A
170 182Right-handed alpha
Helix 3
AA3
A
183 192Right-handed alpha
Helix 4
AA4
A
198 203Right-handed alpha
Helix 5
AA5
A
205 228Right-handed alpha
Helix 6
AA6
A
235 241Right-handed alpha
Helix 7
AA7
A
256 280Right-handed alpha
Helix 8
AA8
A
286 293Right-handed alpha
Helix 9
AA9
A
325 335Right-handed alpha
Helix 10
AB1
A
395 398Right-handed 310
Helix 11
AB2
A
401 431Right-handed alpha
Helix 12
AB3
A
440 454Right-handed alpha
Helix 13
AB4
A
534 572Right-handed alpha
Helix 14
AB5
A
576 580Right-handed 310
Helix 15
AB6
A
625 634Right-handed alpha
Helix 16
AB7
A
674 698Right-handed alpha
Helix 17
AB8
B
170 182Right-handed alpha
Helix 18
AB9
B
183 192Right-handed alpha
Helix 19
AC1
B
205 228Right-handed alpha
Helix 20
AC2
B
235 241Right-handed alpha
Helix 21
AC3
B
256 276Right-handed alpha
Helix 22
AC4
B
286 293Right-handed alpha
Helix 23
AC5
B
325 335Right-handed alpha
Helix 24
AC6
B
395 398Right-handed 310
Helix 25
AC7
B
401 431Right-handed alpha
Helix 26
AC8
B
440 455Right-handed alpha
Helix 27
AC9
B
534 572Right-handed alpha
Helix 28
AD1
B
576 580Right-handed 310
Helix 29
AD2
B
625 634Right-handed alpha
Helix 30
AD3
B
669 673Right-handed 310
Helix 31
AD4
B
674 695Right-handed alpha
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There are 9 sheets in PDB entry 8P1P. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
163 164first strand
Strand 2
A
232 233parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
305 313first strand
Strand 2
A
294 302anti-parallel
Strand 3
A
351 358anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
316 319first strand
Strand 2
A
362 368parallel
Strand 3
A
640 649anti-parallel
Strand 4
A
583 595anti-parallel
Strand 5
A
391 393anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
316 319first strand
Strand 2
A
362 368parallel
Strand 3
A
640 649anti-parallel
Strand 4
A
583 595anti-parallel
Strand 5
A
598 607anti-parallel
Strand 6
A
612 617anti-parallel
Strand 7
A
620 623anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
163 164first strand
Strand 2
B
232 233parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
305 313first strand
Strand 2
B
294 303anti-parallel
Strand 3
B
349 350anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
305 313first strand
Strand 2
B
294 303anti-parallel
Strand 3
B
353 358anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
316 319first strand
Strand 2
B
362 368parallel
Strand 3
B
640 649anti-parallel
Strand 4
B
583 594anti-parallel
Strand 5
B
391 393anti-parallel
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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
316 319first strand
Strand 2
B
362 368parallel
Strand 3
B
640 649anti-parallel
Strand 4
B
583 594anti-parallel
Strand 5
B
599 607anti-parallel
Strand 6
B
612 617anti-parallel
Strand 7
B
620 623anti-parallel
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