Analysis of interatomic Contacts of Structural Units in PDB entry:
8P1U


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8P1U entry

There are 5 chains in PDB entry 8P1U (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 LEU 4ALA 96
A
 MET 1HIS 382
B
 PHE 6ASN 559
D
 PRO 6LEU 92
E
 TYR 172ALA 270
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 43 helices in PDB entry 8P1U. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
C
12 69Right-handed alpha
Helix 2
AA2
C
70 81Right-handed alpha
Helix 3
AA3
A
21 51Right-handed alpha
Helix 4
AA4
A
55 78Right-handed alpha
Helix 5
AA5
A
79 103Right-handed alpha
Helix 6
AA6
A
125 146Right-handed alpha
Helix 7
AA7
A
152 157Right-handed alpha
Helix 8
AA8
A
158 161Right-handed 310
Helix 9
AA9
A
162 173Right-handed alpha
Helix 10
AB1
A
175 193Right-handed alpha
Helix 11
AB2
A
196 215Right-handed alpha
Helix 12
AB3
A
238 253Right-handed alpha
Helix 13
AB4
A
263 268Right-handed alpha
Helix 14
AB5
A
276 285Right-handed alpha
Helix 15
AB6
A
285 314Right-handed alpha
Helix 16
AB7
A
316 342Right-handed alpha
Helix 17
AB8
A
358 379Right-handed alpha
Helix 18
AB9
B
11 38Right-handed alpha
Helix 19
AC1
B
85 90Right-handed alpha
Helix 20
AC2
B
91 94Right-handed 310
Helix 21
AC3
B
95 104Right-handed alpha
Helix 22
AC4
B
106 117Right-handed alpha
Helix 23
AC5
B
130 141Right-handed alpha
Helix 24
AC6
B
177 182Right-handed alpha
Helix 25
AC7
B
182 187Right-handed alpha
Helix 26
AC8
B
224 243Right-handed alpha
Helix 27
AC9
B
277 282Right-handed alpha
Helix 28
AD1
B
292 295Right-handed 310
Helix 29
AD2
B
296 309Right-handed alpha
Helix 30
AD3
B
342 348Right-handed alpha
Helix 31
AD4
B
351 361Right-handed alpha
Helix 32
AD5
B
362 373Right-handed alpha
Helix 33
AD6
B
398 406Right-handed alpha
Helix 34
AD7
B
415 427Right-handed alpha
Helix 35
AD8
B
450 467Right-handed alpha
Helix 36
AD9
B
533 538Right-handed alpha
Helix 37
AE1
B
538 553Right-handed alpha
Helix 38
AE2
D
8 26Right-handed alpha
Helix 39
AE3
D
30 66Right-handed alpha
Helix 40
AE4
D
69 79Right-handed alpha
Helix 41
AE5
E
184 200Right-handed alpha
Helix 42
AE6
E
201 203Right-handed 310
Helix 43
AE7
E
233 248Right-handed alpha
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There are 9 sheets in PDB entry 8P1U. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
93 94first strand
Strand 2
D
89 91parallel
Strand 3
E
267 270anti-parallel
Strand 4
E
258 260anti-parallel
Strand 5
E
226 229parallel
Strand 6
E
217 221anti-parallel
Strand 7
E
206 211anti-parallel
Strand 8
E
177 178parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
53 58first strand
Strand 2
B
191 197anti-parallel
Strand 3
B
203 211anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
123 124first strand
Strand 2
B
72 84anti-parallel
Strand 3
B
146 154anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
123 124first strand
Strand 2
B
72 84anti-parallel
Strand 3
B
65 66anti-parallel
Strand 4
B
219 220parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
259 263first strand
Strand 2
B
247 253anti-parallel
Strand 3
B
518 524anti-parallel
Strand 4
B
504 510anti-parallel
Strand 5
B
483 488anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
289 290first strand
Strand 2
B
413 414anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
315 316first strand
Strand 2
B
340 341anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
322 325first strand
Strand 2
B
328 331anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
430 431first strand
Strand 2
B
446 447anti-parallel
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