Analysis of interatomic Contacts of Structural Units in PDB entry:
8P23


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8P23 entry

There are 2 chains in PDB entry 8P23 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 2ILE 735
B
 ILE 2GLY 736
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 54 helices in PDB entry 8P23. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
18 29Right-handed alpha
Helix 2
AA2
A
36 49Right-handed alpha
Helix 3
AA3
A
56 71Right-handed alpha
Helix 4
AA4
A
74 91Right-handed alpha
Helix 5
AA5
A
95 105Right-handed alpha
Helix 6
AA6
A
121 139Right-handed alpha
Helix 7
AA7
A
144 153Right-handed alpha
Helix 8
AA8
A
163 167Right-handed 310
Helix 9
AA9
A
177 182Right-handed alpha
Helix 10
AB1
A
196 214Right-handed alpha
Helix 11
AB2
A
223 229Right-handed alpha
Helix 12
AB3
A
231 247Right-handed alpha
Helix 13
AB4
A
274 299Right-handed alpha
Helix 14
AB5
A
322 339Right-handed alpha
Helix 15
AB6
A
367 378Right-handed alpha
Helix 16
AB7
A
444 449Right-handed alpha
Helix 17
AB8
A
455 487Right-handed alpha
Helix 18
AB9
A
488 493Right-handed 310
Helix 19
AC1
A
495 500Right-handed alpha
Helix 20
AC2
A
513 518Right-handed alpha
Helix 21
AC3
A
545 570Right-handed alpha
Helix 22
AC4
A
585 596Right-handed alpha
Helix 23
AC5
A
620 629Right-handed alpha
Helix 24
AC6
A
631 635Right-handed 310
Helix 25
AC7
A
646 652Right-handed 310
Helix 26
AC8
A
653 666Right-handed alpha
Helix 27
AC9
A
721 730Right-handed alpha
Helix 28
AD1
B
19 28Right-handed alpha
Helix 29
AD2
B
37 49Right-handed alpha
Helix 30
AD3
B
56 70Right-handed alpha
Helix 31
AD4
B
77 91Right-handed alpha
Helix 32
AD5
B
92 105Right-handed alpha
Helix 33
AD6
B
121 142Right-handed alpha
Helix 34
AD7
B
144 153Right-handed alpha
Helix 35
AD8
B
160 167Right-handed 310
Helix 36
AD9
B
177 183Right-handed alpha
Helix 37
AE1
B
196 210Right-handed alpha
Helix 38
AE2
B
223 229Right-handed alpha
Helix 39
AE3
B
229 247Right-handed alpha
Helix 40
AE4
B
272 299Right-handed alpha
Helix 41
AE5
B
322 339Right-handed alpha
Helix 42
AE6
B
367 382Right-handed alpha
Helix 43
AE7
B
443 449Right-handed alpha
Helix 44
AE8
B
455 487Right-handed alpha
Helix 45
AE9
B
513 517Right-handed 310
Helix 46
AF1
B
531 536Right-handed alpha
Helix 47
AF2
B
544 570Right-handed alpha
Helix 48
AF3
B
582 585Right-handed 310
Helix 49
AF4
B
586 596Right-handed alpha
Helix 50
AF5
B
620 629Right-handed alpha
Helix 51
AF6
B
630 634Right-handed 310
Helix 52
AF7
B
646 650Right-handed 310
Helix 53
AF8
B
654 666Right-handed alpha
Helix 54
AF9
B
724 729Right-handed alpha
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There are 7 sheets in PDB entry 8P23. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
156 158first strand
Strand 2
A
435 442anti-parallel
Strand 3
A
521 527parallel
Strand 4
A
573 577parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
172 173first strand
Strand 2
A
219 221parallel
Strand 3
A
313 317parallel
Strand 4
A
350 355parallel
Strand 5
A
385 388parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
643 645first strand
Strand 2
A
673 675parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
156 158first strand
Strand 2
B
435 442anti-parallel
Strand 3
B
521 527parallel
Strand 4
B
573 577parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
172 173first strand
Strand 2
B
219 221parallel
Strand 3
B
313 317parallel
Strand 4
B
350 355parallel
Strand 5
B
385 388parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
413 414first strand
Strand 2
B
418 419anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
678 679first strand
Strand 2
B
704 705anti-parallel
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