Analysis of interatomic Contacts of Structural Units in PDB entry:
8P27


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8P27 entry

There are 2 chains in PDB entry 8P27 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 120HIS 675
B
 ASP 120HIS 675
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 47 helices in PDB entry 8P27. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
121 142Right-handed alpha
Helix 2
AA2
A
144 152Right-handed alpha
Helix 3
AA3
A
160 164Right-handed 310
Helix 4
AA4
A
175 182Right-handed alpha
Helix 5
AA5
A
196 211Right-handed alpha
Helix 6
AA6
A
212 214Right-handed 310
Helix 7
AA7
A
223 247Right-handed alpha
Helix 8
AA8
A
278 283Right-handed alpha
Helix 9
AA9
A
283 299Right-handed alpha
Helix 10
AB1
A
322 334Right-handed alpha
Helix 11
AB2
A
334 339Right-handed alpha
Helix 12
AB3
A
367 382Right-handed alpha
Helix 13
AB4
A
405 410Right-handed 310
Helix 14
AB5
A
442 450Right-handed alpha
Helix 15
AB6
A
455 486Right-handed alpha
Helix 16
AB7
A
495 500Right-handed alpha
Helix 17
AB8
A
516 520Right-handed 310
Helix 18
AB9
A
528 534Right-handed alpha
Helix 19
AC1
A
545 550Right-handed alpha
Helix 20
AC2
A
552 570Right-handed alpha
Helix 21
AC3
A
585 596Right-handed alpha
Helix 22
AC4
A
620 629Right-handed alpha
Helix 23
AC5
A
630 635Right-handed alpha
Helix 24
AC6
A
653 666Right-handed alpha
Helix 25
AC7
B
121 142Right-handed alpha
Helix 26
AC8
B
147 152Right-handed alpha
Helix 27
AC9
B
160 164Right-handed 310
Helix 28
AD1
B
176 182Right-handed alpha
Helix 29
AD2
B
196 212Right-handed alpha
Helix 30
AD3
B
213 215Right-handed 310
Helix 31
AD4
B
223 229Right-handed alpha
Helix 32
AD5
B
229 241Right-handed alpha
Helix 33
AD6
B
272 299Right-handed alpha
Helix 34
AD7
B
322 334Right-handed alpha
Helix 35
AD8
B
334 339Right-handed alpha
Helix 36
AD9
B
367 382Right-handed alpha
Helix 37
AE1
B
405 410Right-handed 310
Helix 38
AE2
B
442 450Right-handed alpha
Helix 39
AE3
B
455 486Right-handed alpha
Helix 40
AE4
B
489 493Right-handed 310
Helix 41
AE5
B
516 520Right-handed 310
Helix 42
AE6
B
528 534Right-handed alpha
Helix 43
AE7
B
545 570Right-handed alpha
Helix 44
AE8
B
585 593Right-handed alpha
Helix 45
AE9
B
620 629Right-handed alpha
Helix 46
AF1
B
630 635Right-handed alpha
Helix 47
AF2
B
653 666Right-handed alpha
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There are 6 sheets in PDB entry 8P27. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
156 158first strand
Strand 2
A
434 441anti-parallel
Strand 3
A
521 526parallel
Strand 4
A
573 577parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
156 158first strand
Strand 2
A
434 441anti-parallel
Strand 3
A
171 173anti-parallel
Strand 4
A
219 221parallel
Strand 5
A
313 317parallel
Strand 6
A
350 355parallel
Strand 7
A
385 388parallel
Strand 8
A
670 673anti-parallel
Strand 9
A
642 643parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
185 186first strand
Strand 2
A
189 190anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
156 158first strand
Strand 2
B
434 441anti-parallel
Strand 3
B
521 524parallel
Strand 4
B
573 575parallel
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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
156 158first strand
Strand 2
B
434 441anti-parallel
Strand 3
B
171 173anti-parallel
Strand 4
B
219 221parallel
Strand 5
B
313 317parallel
Strand 6
B
350 355parallel
Strand 7
B
385 388parallel
Strand 8
B
670 674anti-parallel
Strand 9
B
642 644parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
185 186first strand
Strand 2
B
189 190anti-parallel
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