Analysis of interatomic Contacts of Structural Units in PDB entry:
8P2C

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8P2C entry

There are 4 chains in PDB entry 8P2C (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ASN 674
B	MET 1	ASN 674
C	MET 1	ASN 674
D	MET 1	ASN 674

There are108 helices in PDB entry 8P2C. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	18	30	Right-handed alpha
Helix 2	AA2	A	36	45	Right-handed alpha
Helix 3	AA3	A	57	69	Right-handed alpha
Helix 4	AA4	A	74	92	Right-handed alpha
Helix 5	AA5	A	95	100	Right-handed alpha
Helix 6	AA6	A	121	142	Right-handed alpha
Helix 7	AA7	A	144	153	Right-handed alpha
Helix 8	AA8	A	160	164	Right-handed 310
Helix 9	AA9	A	175	182	Right-handed alpha
Helix 10	AB1	A	197	213	Right-handed alpha
Helix 11	AB2	A	223	247	Right-handed alpha
Helix 12	AB3	A	272	301	Right-handed alpha
Helix 13	AB4	A	323	339	Right-handed alpha
Helix 14	AB5	A	367	382	Right-handed alpha
Helix 15	AB6	A	405	410	Right-handed 310
Helix 16	AB7	A	443	450	Right-handed alpha
Helix 17	AB8	A	455	486	Right-handed alpha
Helix 18	AB9	A	489	492	Right-handed 310
Helix 19	AC1	A	493	499	Right-handed alpha
Helix 20	AC2	A	513	520	Right-handed 310
Helix 21	AC3	A	528	537	Right-handed alpha
Helix 22	AC4	A	544	570	Right-handed alpha
Helix 23	AC5	A	585	596	Right-handed alpha
Helix 24	AC6	A	620	629	Right-handed alpha
Helix 25	AC7	A	630	635	Right-handed alpha
Helix 26	AC8	A	653	666	Right-handed alpha
Helix 27	AC9	B	17	29	Right-handed alpha
Helix 28	AD1	B	38	49	Right-handed alpha
Helix 29	AD2	B	57	69	Right-handed alpha
Helix 30	AD3	B	73	93	Right-handed alpha
Helix 31	AD4	B	97	103	Right-handed alpha
Helix 32	AD5	B	121	142	Right-handed alpha
Helix 33	AD6	B	144	153	Right-handed alpha
Helix 34	AD7	B	175	182	Right-handed alpha
Helix 35	AD8	B	199	211	Right-handed alpha
Helix 36	AD9	B	212	214	Right-handed 310
Helix 37	AE1	B	223	229	Right-handed alpha
Helix 38	AE2	B	229	247	Right-handed alpha
Helix 39	AE3	B	274	276	Right-handed 310
Helix 40	AE4	B	277	305	Right-handed alpha
Helix 41	AE5	B	322	339	Right-handed alpha
Helix 42	AE6	B	368	382	Right-handed alpha
Helix 43	AE7	B	405	410	Right-handed 310
Helix 44	AE8	B	443	449	Right-handed alpha
Helix 45	AE9	B	455	460	Right-handed alpha
Helix 46	AF1	B	462	486	Right-handed alpha
Helix 47	AF2	B	489	493	Right-handed 310
Helix 48	AF3	B	495	500	Right-handed alpha
Helix 49	AF4	B	512	520	Right-handed 310
Helix 50	AF5	B	528	535	Right-handed alpha
Helix 51	AF6	B	544	570	Right-handed alpha
Helix 52	AF7	B	587	596	Right-handed alpha
Helix 53	AF8	B	620	629	Right-handed alpha
Helix 54	AF9	B	630	633	Right-handed 310
Helix 55	AG1	B	653	666	Right-handed alpha
Helix 56	AG2	C	17	29	Right-handed alpha
Helix 57	AG3	C	36	48	Right-handed alpha
Helix 58	AG4	C	57	70	Right-handed alpha
Helix 59	AG5	C	74	92	Right-handed alpha
Helix 60	AG6	C	94	101	Right-handed alpha
Helix 61	AG7	C	121	142	Right-handed alpha
Helix 62	AG8	C	144	153	Right-handed alpha
Helix 63	AG9	C	160	164	Right-handed 310
Helix 64	AH1	C	175	182	Right-handed alpha
Helix 65	AH2	C	196	211	Right-handed alpha
Helix 66	AH3	C	212	215	Right-handed 310
Helix 67	AH4	C	223	229	Right-handed alpha
Helix 68	AH5	C	231	247	Right-handed alpha
Helix 69	AH6	C	274	301	Right-handed alpha
Helix 70	AH7	C	322	339	Right-handed alpha
Helix 71	AH8	C	367	382	Right-handed alpha
Helix 72	AH9	C	405	410	Right-handed 310
Helix 73	AI1	C	443	450	Right-handed alpha
Helix 74	AI2	C	457	486	Right-handed alpha
Helix 75	AI3	C	489	493	Right-handed 310
Helix 76	AI4	C	513	518	Right-handed alpha
Helix 77	AI5	C	528	537	Right-handed alpha
Helix 78	AI6	C	544	570	Right-handed alpha
Helix 79	AI7	C	585	596	Right-handed alpha
Helix 80	AI8	C	620	629	Right-handed alpha
Helix 81	AI9	C	653	666	Right-handed alpha
Helix 82	AJ1	D	19	29	Right-handed alpha
Helix 83	AJ2	D	36	49	Right-handed alpha
Helix 84	AJ3	D	57	69	Right-handed alpha
Helix 85	AJ4	D	73	93	Right-handed alpha
Helix 86	AJ5	D	97	103	Right-handed alpha
Helix 87	AJ6	D	121	142	Right-handed alpha
Helix 88	AJ7	D	144	153	Right-handed alpha
Helix 89	AJ8	D	175	183	Right-handed alpha
Helix 90	AJ9	D	196	213	Right-handed alpha
Helix 91	AK1	D	223	229	Right-handed alpha
Helix 92	AK2	D	229	244	Right-handed alpha
Helix 93	AK3	D	251	255	Right-handed 310
Helix 94	AK4	D	275	304	Right-handed alpha
Helix 95	AK5	D	322	336	Right-handed alpha
Helix 96	AK6	D	367	378	Right-handed alpha
Helix 97	AK7	D	405	410	Right-handed 310
Helix 98	AK8	D	443	449	Right-handed alpha
Helix 99	AK9	D	455	486	Right-handed alpha
Helix 100	AL1	D	489	493	Right-handed 310
Helix 101	AL2	D	495	500	Right-handed alpha
Helix 102	AL3	D	512	516	Right-handed 310
Helix 103	AL4	D	529	537	Right-handed alpha
Helix 104	AL5	D	544	570	Right-handed alpha
Helix 105	AL6	D	588	596	Right-handed alpha
Helix 106	AL7	D	620	629	Right-handed alpha
Helix 107	AL8	D	630	635	Right-handed 310
Helix 108	AL9	D	653	666	Right-handed alpha

There are 14 sheets in PDB entry 8P2C. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	12	14	first strand
Strand 2	A	4	6	anti-parallel
Strand 3	A	54	56	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	156	158	first strand
Strand 2	A	435	442	anti-parallel
Strand 3	A	521	527	parallel
Strand 4	A	573	577	parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	172	173	first strand
Strand 2	A	219	221	parallel
Strand 3	A	313	317	parallel
Strand 4	A	350	355	parallel
Strand 5	A	385	388	parallel
Strand 6	A	670	673	anti-parallel
Strand 7	A	641	643	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	12	14	first strand
Strand 2	B	4	6	anti-parallel
Strand 3	B	54	56	parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	156	158	first strand
Strand 2	B	435	442	anti-parallel
Strand 3	B	521	527	parallel
Strand 4	B	573	577	parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	172	173	first strand
Strand 2	B	219	221	parallel
Strand 3	B	313	317	parallel
Strand 4	B	350	355	parallel
Strand 5	B	385	388	parallel
Strand 6	B	670	671	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	184	186	first strand
Strand 2	B	189	191	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	12	13	first strand
Strand 2	C	4	6	anti-parallel
Strand 3	C	54	56	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	156	158	first strand
Strand 2	C	435	442	anti-parallel
Strand 3	C	521	527	parallel
Strand 4	C	573	577	parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	172	173	first strand
Strand 2	C	219	221	parallel
Strand 3	C	313	317	parallel
Strand 4	C	350	355	parallel
Strand 5	C	385	388	parallel
Strand 6	C	670	673	anti-parallel
Strand 7	C	642	643	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	12	14	first strand
Strand 2	D	2	6	anti-parallel
Strand 3	D	53	56	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	156	158	first strand
Strand 2	D	435	442	anti-parallel
Strand 3	D	521	527	parallel
Strand 4	D	573	577	parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	172	173	first strand
Strand 2	D	219	221	parallel
Strand 3	D	313	317	parallel
Strand 4	D	350	355	parallel
Strand 5	D	385	388	parallel
Strand 6	D	670	671	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	184	186	first strand
Strand 2	D	189	191	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8P2C

Analysis of interatomic Contacts of Structural Units in PDB entry:
8P2C