Analysis of interatomic Contacts of Structural Units in PDB entry:
8P2D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8P2D entry

There are 2 chains in PDB entry 8P2D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 120HIS 675
B
 ASP 120ASN 674
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 45 helices in PDB entry 8P2D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
121 141Right-handed alpha
Helix 2
AA2
A
144 149Right-handed alpha
Helix 3
AA3
A
177 182Right-handed alpha
Helix 4
AA4
A
196 213Right-handed alpha
Helix 5
AA5
A
228 243Right-handed alpha
Helix 6
AA6
A
253 257Right-handed 310
Helix 7
AA7
A
278 284Right-handed alpha
Helix 8
AA8
A
284 289Right-handed alpha
Helix 9
AA9
A
290 301Right-handed alpha
Helix 10
AB1
A
322 339Right-handed alpha
Helix 11
AB2
A
367 382Right-handed alpha
Helix 12
AB3
A
405 410Right-handed 310
Helix 13
AB4
A
443 450Right-handed alpha
Helix 14
AB5
A
455 486Right-handed alpha
Helix 15
AB6
A
489 493Right-handed 310
Helix 16
AB7
A
516 520Right-handed 310
Helix 17
AB8
A
528 533Right-handed alpha
Helix 18
AB9
A
545 552Right-handed alpha
Helix 19
AC1
A
555 570Right-handed alpha
Helix 20
AC2
A
587 595Right-handed alpha
Helix 21
AC3
A
620 629Right-handed alpha
Helix 22
AC4
A
630 635Right-handed alpha
Helix 23
AC5
A
653 666Right-handed alpha
Helix 24
AC6
B
121 142Right-handed alpha
Helix 25
AC7
B
144 152Right-handed alpha
Helix 26
AC8
B
160 164Right-handed 310
Helix 27
AC9
B
175 182Right-handed alpha
Helix 28
AD1
B
196 213Right-handed alpha
Helix 29
AD2
B
223 229Right-handed alpha
Helix 30
AD3
B
229 241Right-handed alpha
Helix 31
AD4
B
242 246Right-handed 310
Helix 32
AD5
B
273 278Right-handed alpha
Helix 33
AD6
B
278 301Right-handed alpha
Helix 34
AD7
B
322 334Right-handed alpha
Helix 35
AD8
B
334 339Right-handed alpha
Helix 36
AD9
B
367 382Right-handed alpha
Helix 37
AE1
B
405 410Right-handed 310
Helix 38
AE2
B
443 450Right-handed alpha
Helix 39
AE3
B
455 486Right-handed alpha
Helix 40
AE4
B
529 534Right-handed alpha
Helix 41
AE5
B
544 570Right-handed alpha
Helix 42
AE6
B
585 591Right-handed alpha
Helix 43
AE7
B
620 629Right-handed alpha
Helix 44
AE8
B
630 632Right-handed 310
Helix 45
AE9
B
653 666Right-handed alpha
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There are 6 sheets in PDB entry 8P2D. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
156 158first strand
Strand 2
A
435 442anti-parallel
Strand 3
A
521 527parallel
Strand 4
A
573 577parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
172 173first strand
Strand 2
A
219 221parallel
Strand 3
A
313 317parallel
Strand 4
A
350 355parallel
Strand 5
A
385 388parallel
Strand 6
A
670 673anti-parallel
Strand 7
A
642 643parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
156 158first strand
Strand 2
B
434 442anti-parallel
Strand 3
B
171 172anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
156 158first strand
Strand 2
B
434 442anti-parallel
Strand 3
B
521 527parallel
Strand 4
B
573 577parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
220 221first strand
Strand 2
B
314 317parallel
Strand 3
B
350 355parallel
Strand 4
B
385 388parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
642 643first strand
Strand 2
B
672 673parallel
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