Analysis of interatomic Contacts of Structural Units in PDB entry:
8P2J

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8P2J entry

There are 9 chains in PDB entry 8P2J (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 2	LYS 288
B	MET 1	LYS 288
C	LEU -5	MET 287
D	MET 1	LYS 288
E	PHE -4	LYS 288
F	MET 1	LYS 288
G	PHE -4	LYS 288
H	SER 4	LYS 288
I	MET 1	LYS 288

There are150 helices in PDB entry 8P2J. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	12	25	Right-handed alpha
Helix 2	AA2	A	35	38	Right-handed 310
Helix 3	AA3	A	39	44	Right-handed alpha
Helix 4	AA4	A	52	59	Right-handed alpha
Helix 5	AA5	A	69	80	Right-handed alpha
Helix 6	AA6	A	96	110	Right-handed alpha
Helix 7	AA7	A	122	126	Right-handed 310
Helix 8	AA8	A	138	150	Right-handed alpha
Helix 9	AA9	A	151	153	Right-handed 310
Helix 10	AB1	A	163	192	Right-handed alpha
Helix 11	AB2	A	196	204	Right-handed alpha
Helix 12	AB3	A	204	215	Right-handed alpha
Helix 13	AB4	A	215	226	Right-handed alpha
Helix 14	AB5	A	234	252	Right-handed alpha
Helix 15	AB6	A	259	272	Right-handed alpha
Helix 16	AB7	A	278	280	Right-handed 310
Helix 17	AB8	A	281	287	Right-handed alpha
Helix 18	AB9	B	12	25	Right-handed alpha
Helix 19	AC1	B	35	38	Right-handed 310
Helix 20	AC2	B	39	44	Right-handed alpha
Helix 21	AC3	B	52	59	Right-handed alpha
Helix 22	AC4	B	69	80	Right-handed alpha
Helix 23	AC5	B	96	110	Right-handed alpha
Helix 24	AC6	B	122	126	Right-handed 310
Helix 25	AC7	B	138	150	Right-handed alpha
Helix 26	AC8	B	163	192	Right-handed alpha
Helix 27	AC9	B	196	204	Right-handed alpha
Helix 28	AD1	B	204	215	Right-handed alpha
Helix 29	AD2	B	215	226	Right-handed alpha
Helix 30	AD3	B	234	253	Right-handed alpha
Helix 31	AD4	B	259	272	Right-handed alpha
Helix 32	AD5	B	278	280	Right-handed 310
Helix 33	AD6	B	281	287	Right-handed alpha
Helix 34	AD7	C	12	25	Right-handed alpha
Helix 35	AD8	C	35	38	Right-handed 310
Helix 36	AD9	C	39	44	Right-handed alpha
Helix 37	AE1	C	52	59	Right-handed alpha
Helix 38	AE2	C	69	80	Right-handed alpha
Helix 39	AE3	C	96	110	Right-handed alpha
Helix 40	AE4	C	122	126	Right-handed 310
Helix 41	AE5	C	138	150	Right-handed alpha
Helix 42	AE6	C	151	153	Right-handed 310
Helix 43	AE7	C	163	192	Right-handed alpha
Helix 44	AE8	C	196	204	Right-handed alpha
Helix 45	AE9	C	204	215	Right-handed alpha
Helix 46	AF1	C	215	226	Right-handed alpha
Helix 47	AF2	C	234	252	Right-handed alpha
Helix 48	AF3	C	259	272	Right-handed alpha
Helix 49	AF4	C	278	280	Right-handed 310
Helix 50	AF5	C	281	287	Right-handed alpha
Helix 51	AF6	D	12	25	Right-handed alpha
Helix 52	AF7	D	35	38	Right-handed 310
Helix 53	AF8	D	39	44	Right-handed alpha
Helix 54	AF9	D	52	59	Right-handed alpha
Helix 55	AG1	D	69	79	Right-handed alpha
Helix 56	AG2	D	96	110	Right-handed alpha
Helix 57	AG3	D	122	126	Right-handed 310
Helix 58	AG4	D	138	150	Right-handed alpha
Helix 59	AG5	D	151	153	Right-handed 310
Helix 60	AG6	D	163	192	Right-handed alpha
Helix 61	AG7	D	196	204	Right-handed alpha
Helix 62	AG8	D	204	215	Right-handed alpha
Helix 63	AG9	D	215	226	Right-handed alpha
Helix 64	AH1	D	234	252	Right-handed alpha
Helix 65	AH2	D	259	272	Right-handed alpha
Helix 66	AH3	D	278	280	Right-handed 310
Helix 67	AH4	D	281	288	Right-handed alpha
Helix 68	AH5	E	12	25	Right-handed alpha
Helix 69	AH6	E	35	38	Right-handed 310
Helix 70	AH7	E	39	44	Right-handed alpha
Helix 71	AH8	E	52	59	Right-handed alpha
Helix 72	AH9	E	69	80	Right-handed alpha
Helix 73	AI1	E	96	110	Right-handed alpha
Helix 74	AI2	E	122	126	Right-handed 310
Helix 75	AI3	E	138	150	Right-handed alpha
Helix 76	AI4	E	163	192	Right-handed alpha
Helix 77	AI5	E	196	204	Right-handed alpha
Helix 78	AI6	E	204	215	Right-handed alpha
Helix 79	AI7	E	215	226	Right-handed alpha
Helix 80	AI8	E	234	252	Right-handed alpha
Helix 81	AI9	E	259	272	Right-handed alpha
Helix 82	AJ1	E	278	280	Right-handed 310
Helix 83	AJ2	E	281	288	Right-handed alpha
Helix 84	AJ3	F	12	25	Right-handed alpha
Helix 85	AJ4	F	35	38	Right-handed 310
Helix 86	AJ5	F	39	44	Right-handed alpha
Helix 87	AJ6	F	52	59	Right-handed alpha
Helix 88	AJ7	F	69	80	Right-handed alpha
Helix 89	AJ8	F	96	110	Right-handed alpha
Helix 90	AJ9	F	122	126	Right-handed 310
Helix 91	AK1	F	138	150	Right-handed alpha
Helix 92	AK2	F	151	153	Right-handed 310
Helix 93	AK3	F	163	192	Right-handed alpha
Helix 94	AK4	F	196	204	Right-handed alpha
Helix 95	AK5	F	204	215	Right-handed alpha
Helix 96	AK6	F	215	226	Right-handed alpha
Helix 97	AK7	F	234	252	Right-handed alpha
Helix 98	AK8	F	259	272	Right-handed alpha
Helix 99	AK9	F	278	280	Right-handed 310
Helix 100	AL1	F	281	287	Right-handed alpha
Helix 101	AL2	G	12	25	Right-handed alpha
Helix 102	AL3	G	35	38	Right-handed 310
Helix 103	AL4	G	39	44	Right-handed alpha
Helix 104	AL5	G	52	59	Right-handed alpha
Helix 105	AL6	G	69	80	Right-handed alpha
Helix 106	AL7	G	96	110	Right-handed alpha
Helix 107	AL8	G	122	126	Right-handed 310
Helix 108	AL9	G	138	150	Right-handed alpha
Helix 109	AM1	G	151	153	Right-handed 310
Helix 110	AM2	G	163	192	Right-handed alpha
Helix 111	AM3	G	196	204	Right-handed alpha
Helix 112	AM4	G	204	215	Right-handed alpha
Helix 113	AM5	G	215	226	Right-handed alpha
Helix 114	AM6	G	234	252	Right-handed alpha
Helix 115	AM7	G	259	272	Right-handed alpha
Helix 116	AM8	G	278	280	Right-handed 310
Helix 117	AM9	G	281	287	Right-handed alpha
Helix 118	AN1	H	12	25	Right-handed alpha
Helix 119	AN2	H	35	38	Right-handed 310
Helix 120	AN3	H	39	44	Right-handed alpha
Helix 121	AN4	H	52	59	Right-handed alpha
Helix 122	AN5	H	69	80	Right-handed alpha
Helix 123	AN6	H	96	110	Right-handed alpha
Helix 124	AN7	H	122	126	Right-handed 310
Helix 125	AN8	H	138	150	Right-handed alpha
Helix 126	AN9	H	163	192	Right-handed alpha
Helix 127	AO1	H	196	204	Right-handed alpha
Helix 128	AO2	H	204	215	Right-handed alpha
Helix 129	AO3	H	215	226	Right-handed alpha
Helix 130	AO4	H	234	252	Right-handed alpha
Helix 131	AO5	H	259	272	Right-handed alpha
Helix 132	AO6	H	278	280	Right-handed 310
Helix 133	AO7	H	281	287	Right-handed alpha
Helix 134	AO8	I	12	25	Right-handed alpha
Helix 135	AO9	I	35	38	Right-handed 310
Helix 136	AP1	I	39	44	Right-handed alpha
Helix 137	AP2	I	52	59	Right-handed alpha
Helix 138	AP3	I	69	79	Right-handed alpha
Helix 139	AP4	I	96	110	Right-handed alpha
Helix 140	AP5	I	122	126	Right-handed 310
Helix 141	AP6	I	138	150	Right-handed alpha
Helix 142	AP7	I	151	153	Right-handed 310
Helix 143	AP8	I	163	192	Right-handed alpha
Helix 144	AP9	I	196	204	Right-handed alpha
Helix 145	AQ1	I	204	215	Right-handed alpha
Helix 146	AQ2	I	215	226	Right-handed alpha
Helix 147	AQ3	I	234	252	Right-handed alpha
Helix 148	AQ4	I	259	272	Right-handed alpha
Helix 149	AQ5	I	278	280	Right-handed 310
Helix 150	AQ6	I	281	287	Right-handed alpha

There are 9 sheets in PDB entry 8P2J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	48	49	first strand
Strand 2	A	27	32	parallel
Strand 3	A	3	9	parallel
Strand 4	A	62	65	parallel
Strand 5	A	88	91	parallel
Strand 6	A	113	120	parallel
Strand 7	A	132	136	anti-parallel
Strand 8	A	154	159	parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	48	49	first strand
Strand 2	B	27	32	parallel
Strand 3	B	3	9	parallel
Strand 4	B	62	65	parallel
Strand 5	B	88	91	parallel
Strand 6	B	113	120	parallel
Strand 7	B	132	136	anti-parallel
Strand 8	B	154	157	parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	48	49	first strand
Strand 2	C	27	32	parallel
Strand 3	C	3	9	parallel
Strand 4	C	62	65	parallel
Strand 5	C	88	91	parallel
Strand 6	C	113	120	parallel
Strand 7	C	132	136	anti-parallel
Strand 8	C	154	157	parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	48	49	first strand
Strand 2	D	27	32	parallel
Strand 3	D	3	9	parallel
Strand 4	D	62	65	parallel
Strand 5	D	88	91	parallel
Strand 6	D	113	120	parallel
Strand 7	D	132	136	anti-parallel
Strand 8	D	154	157	parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	48	49	first strand
Strand 2	E	27	32	parallel
Strand 3	E	3	9	parallel
Strand 4	E	62	65	parallel
Strand 5	E	88	91	parallel
Strand 6	E	113	120	parallel
Strand 7	E	132	136	anti-parallel
Strand 8	E	154	157	parallel

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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	48	49	first strand
Strand 2	F	29	32	parallel
Strand 3	F	6	9	parallel
Strand 4	F	62	65	parallel
Strand 5	F	88	91	parallel
Strand 6	F	113	120	parallel
Strand 7	F	132	136	anti-parallel
Strand 8	F	154	157	parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	48	49	first strand
Strand 2	G	27	32	parallel
Strand 3	G	3	9	parallel
Strand 4	G	62	65	parallel
Strand 5	G	88	91	parallel
Strand 6	G	113	120	parallel
Strand 7	G	132	136	anti-parallel
Strand 8	G	154	157	parallel

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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	48	49	first strand
Strand 2	H	29	32	parallel
Strand 3	H	6	9	parallel
Strand 4	H	62	65	parallel
Strand 5	H	88	91	parallel
Strand 6	H	113	120	parallel
Strand 7	H	132	136	anti-parallel
Strand 8	H	154	157	parallel

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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	48	49	first strand
Strand 2	I	29	32	parallel
Strand 3	I	6	9	parallel
Strand 4	I	62	65	parallel
Strand 5	I	88	91	parallel
Strand 6	I	113	120	parallel
Strand 7	I	132	136	anti-parallel
Strand 8	I	154	157	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8P2J

Analysis of interatomic Contacts of Structural Units in PDB entry:
8P2J