Analysis of interatomic Contacts of Structural Units in PDB entry:
8P2S


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8P2S entry

There are 2 chains in PDB entry 8P2S (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 120HIS 675
B
 ASN 85ILE 735
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 46 helices in PDB entry 8P2S. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
121 139Right-handed alpha
Helix 2
AA2
A
144 153Right-handed alpha
Helix 3
AA3
A
175 183Right-handed alpha
Helix 4
AA4
A
196 213Right-handed alpha
Helix 5
AA5
A
223 228Right-handed alpha
Helix 6
AA6
A
229 248Right-handed alpha
Helix 7
AA7
A
251 255Right-handed 310
Helix 8
AA8
A
272 302Right-handed alpha
Helix 9
AA9
A
322 339Right-handed alpha
Helix 10
AB1
A
367 381Right-handed alpha
Helix 11
AB2
A
391 395Right-handed 310
Helix 12
AB3
A
443 451Right-handed alpha
Helix 13
AB4
A
455 486Right-handed alpha
Helix 14
AB5
A
487 488Right-handed 310
Helix 15
AB6
A
489 493Right-handed 310
Helix 16
AB7
A
503 507Right-handed 310
Helix 17
AB8
A
513 518Right-handed alpha
Helix 18
AB9
A
528 534Right-handed alpha
Helix 19
AC1
A
544 570Right-handed alpha
Helix 20
AC2
A
585 596Right-handed alpha
Helix 21
AC3
A
620 635Right-handed alpha
Helix 22
AC4
A
653 666Right-handed alpha
Helix 23
AC5
B
86 105Right-handed alpha
Helix 24
AC6
B
121 141Right-handed alpha
Helix 25
AC7
B
144 153Right-handed alpha
Helix 26
AC8
B
160 164Right-handed 310
Helix 27
AC9
B
175 183Right-handed alpha
Helix 28
AD1
B
196 213Right-handed alpha
Helix 29
AD2
B
223 248Right-handed alpha
Helix 30
AD3
B
251 255Right-handed 310
Helix 31
AD4
B
272 302Right-handed alpha
Helix 32
AD5
B
322 339Right-handed alpha
Helix 33
AD6
B
367 382Right-handed alpha
Helix 34
AD7
B
391 395Right-handed 310
Helix 35
AD8
B
443 450Right-handed alpha
Helix 36
AD9
B
455 487Right-handed alpha
Helix 37
AE1
B
489 493Right-handed 310
Helix 38
AE2
B
495 500Right-handed alpha
Helix 39
AE3
B
513 518Right-handed alpha
Helix 40
AE4
B
544 570Right-handed alpha
Helix 41
AE5
B
586 595Right-handed alpha
Helix 42
AE6
B
620 635Right-handed alpha
Helix 43
AE7
B
647 652Right-handed alpha
Helix 44
AE8
B
653 666Right-handed alpha
Helix 45
AE9
B
716 720Right-handed 310
Helix 46
AF1
B
721 730Right-handed alpha
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There are 7 sheets in PDB entry 8P2S. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
156 158first strand
Strand 2
A
435 442anti-parallel
Strand 3
A
521 527parallel
Strand 4
A
573 577parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
172 173first strand
Strand 2
A
219 221parallel
Strand 3
A
313 317parallel
Strand 4
A
350 355parallel
Strand 5
A
385 388parallel
Strand 6
A
670 674anti-parallel
Strand 7
A
641 644parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
184 186first strand
Strand 2
A
189 191anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
156 158first strand
Strand 2
B
435 442anti-parallel
Strand 3
B
521 527parallel
Strand 4
B
573 576parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
172 173first strand
Strand 2
B
219 221parallel
Strand 3
B
313 317parallel
Strand 4
B
350 355parallel
Strand 5
B
385 388parallel
Strand 6
B
670 674anti-parallel
Strand 7
B
641 644parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
184 186first strand
Strand 2
B
189 191anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
686 687first strand
Strand 2
B
677 679anti-parallel
Strand 3
B
704 708anti-parallel
Strand 4
B
713 714anti-parallel
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