Analysis of interatomic Contacts of Structural Units in PDB entry:
8P2T


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8P2T entry

There are 2 chains in PDB entry 8P2T (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
H
 VAL 30HIS 303
L
 MET 24SER 239
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 8P2T. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
H
91 93Right-handed 310
Helix 2
AA2
H
101 103Right-handed 310
Helix 3
AA3
H
114 118Right-handed 310
Helix 4
AA4
H
167 171Right-handed 310
Helix 5
AA5
H
210 215Right-handed alpha
Helix 6
AA6
H
240 242Right-handed 310
Helix 7
AA7
H
285 288Right-handed 310
Helix 8
AA8
L
51 55Right-handed 310
Helix 9
AA9
L
103 107Right-handed 310
Helix 10
AB1
L
117 120Right-handed 310
Helix 11
AB2
L
148 154Right-handed alpha
Helix 12
AB3
L
209 214Right-handed alpha
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There are 13 sheets in PDB entry 8P2T. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
31 35first strand
Strand 2
H
46 53anti-parallel
Strand 3
H
105 110anti-parallel
Strand 4
H
95 100anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
39 40first strand
Strand 2
H
191 195parallel
Strand 3
H
119 133anti-parallel
Strand 4
H
61 67anti-parallel
Strand 5
H
73 79anti-parallel
Strand 6
H
85 87anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
39 40first strand
Strand 2
H
191 195parallel
Strand 3
H
119 133anti-parallel
Strand 4
H
177 187anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
156 158first strand
Strand 2
H
172 174anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
204 209first strand
Strand 2
H
220 229anti-parallel
Strand 3
H
260 268anti-parallel
Strand 4
H
247 249anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
204 209first strand
Strand 2
H
220 229anti-parallel
Strand 3
H
260 268anti-parallel
Strand 4
H
253 254anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
235 238first strand
Strand 2
H
279 284anti-parallel
Strand 3
H
289 294anti-parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
32 36first strand
Strand 2
L
128 133parallel
Strand 3
L
108 116anti-parallel
Strand 4
L
58 62anti-parallel
Strand 5
L
69 73anti-parallel
Strand 6
L
77 78anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
32 36first strand
Strand 2
L
128 133parallel
Strand 3
L
108 116anti-parallel
Strand 4
L
121 124anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
41 46first strand
Strand 2
L
94 99anti-parallel
Strand 3
L
86 91anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
141 145first strand
Strand 2
L
156 166anti-parallel
Strand 3
L
199 208anti-parallel
Strand 4
L
186 188anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
141 145first strand
Strand 2
L
156 166anti-parallel
Strand 3
L
199 208anti-parallel
Strand 4
L
192 193anti-parallel
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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
180 182first strand
Strand 2
L
172 177anti-parallel
Strand 3
L
218 224anti-parallel
Strand 4
L
227 233anti-parallel
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