Analysis of interatomic Contacts of Structural Units in PDB entry:
8P31

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8P31 entry

There are 4 chains in PDB entry 8P31 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 20	ARG 768
B	THR 20	ARG 768
C	SER 11	ARG 582
D	SER 11	ARG 582

There are134 helices in PDB entry 8P31. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	20	53	Right-handed alpha
Helix 2	AA2	A	55	81	Right-handed alpha
Helix 3	AA3	A	90	100	Right-handed alpha
Helix 4	AA4	A	103	108	Right-handed 310
Helix 5	AA5	A	109	130	Right-handed alpha
Helix 6	AA6	A	147	155	Right-handed alpha
Helix 7	AA7	A	157	172	Right-handed alpha
Helix 8	AA8	A	172	194	Right-handed alpha
Helix 9	AA9	A	198	205	Right-handed alpha
Helix 10	AB1	A	206	208	Right-handed 310
Helix 11	AB2	A	218	250	Right-handed alpha
Helix 12	AB3	A	265	267	Right-handed 310
Helix 13	AB4	A	275	282	Right-handed 310
Helix 14	AB5	A	293	300	Right-handed alpha
Helix 15	AB6	A	305	318	Right-handed alpha
Helix 16	AB7	A	324	331	Right-handed alpha
Helix 17	AB8	A	365	385	Right-handed alpha
Helix 18	AB9	A	389	393	Right-handed 310
Helix 19	AC1	A	399	413	Right-handed alpha
Helix 20	AC2	A	414	422	Right-handed alpha
Helix 21	AC3	A	431	465	Right-handed alpha
Helix 22	AC4	A	472	484	Right-handed alpha
Helix 23	AC5	A	498	502	Right-handed 310
Helix 24	AC6	A	503	508	Right-handed alpha
Helix 25	AC7	A	513	533	Right-handed alpha
Helix 26	AC8	A	538	542	Right-handed 310
Helix 27	AC9	A	547	559	Right-handed alpha
Helix 28	AD1	A	565	572	Right-handed alpha
Helix 29	AD2	A	581	599	Right-handed alpha
Helix 30	AD3	A	623	629	Right-handed alpha
Helix 31	AD4	A	636	658	Right-handed alpha
Helix 32	AD5	A	666	668	Right-handed 310
Helix 33	AD6	A	696	707	Right-handed alpha
Helix 34	AD7	A	707	716	Right-handed alpha
Helix 35	AD8	A	740	768	Right-handed alpha
Helix 36	AD9	B	21	53	Right-handed alpha
Helix 37	AE1	B	55	81	Right-handed alpha
Helix 38	AE2	B	90	100	Right-handed alpha
Helix 39	AE3	B	103	108	Right-handed 310
Helix 40	AE4	B	109	130	Right-handed alpha
Helix 41	AE5	B	147	155	Right-handed alpha
Helix 42	AE6	B	157	172	Right-handed alpha
Helix 43	AE7	B	172	194	Right-handed alpha
Helix 44	AE8	B	198	205	Right-handed alpha
Helix 45	AE9	B	206	208	Right-handed 310
Helix 46	AF1	B	218	250	Right-handed alpha
Helix 47	AF2	B	265	267	Right-handed 310
Helix 48	AF3	B	275	282	Right-handed 310
Helix 49	AF4	B	293	300	Right-handed alpha
Helix 50	AF5	B	305	318	Right-handed alpha
Helix 51	AF6	B	324	331	Right-handed alpha
Helix 52	AF7	B	365	385	Right-handed alpha
Helix 53	AF8	B	389	393	Right-handed 310
Helix 54	AF9	B	399	413	Right-handed alpha
Helix 55	AG1	B	414	422	Right-handed alpha
Helix 56	AG2	B	431	465	Right-handed alpha
Helix 57	AG3	B	472	484	Right-handed alpha
Helix 58	AG4	B	498	502	Right-handed 310
Helix 59	AG5	B	503	508	Right-handed alpha
Helix 60	AG6	B	513	533	Right-handed alpha
Helix 61	AG7	B	538	542	Right-handed 310
Helix 62	AG8	B	547	559	Right-handed alpha
Helix 63	AG9	B	565	572	Right-handed alpha
Helix 64	AH1	B	581	599	Right-handed alpha
Helix 65	AH2	B	623	629	Right-handed alpha
Helix 66	AH3	B	636	658	Right-handed alpha
Helix 67	AH4	B	666	668	Right-handed 310
Helix 68	AH5	B	696	707	Right-handed alpha
Helix 69	AH6	B	707	716	Right-handed alpha
Helix 70	AH7	B	740	768	Right-handed alpha
Helix 71	AH8	C	12	23	Right-handed alpha
Helix 72	AH9	C	24	29	Right-handed alpha
Helix 73	AI1	C	29	38	Right-handed alpha
Helix 74	AI2	C	40	54	Right-handed alpha
Helix 75	AI3	C	54	70	Right-handed alpha
Helix 76	AI4	C	72	81	Right-handed alpha
Helix 77	AI5	C	82	84	Right-handed 310
Helix 78	AI6	C	85	115	Right-handed alpha
Helix 79	AI7	C	136	142	Right-handed alpha
Helix 80	AI8	C	143	151	Right-handed alpha
Helix 81	AI9	C	167	188	Right-handed alpha
Helix 82	AJ1	C	192	199	Right-handed alpha
Helix 83	AJ2	C	201	215	Right-handed alpha
Helix 84	AJ3	C	219	229	Right-handed alpha
Helix 85	AJ4	C	237	253	Right-handed alpha
Helix 86	AJ5	C	257	265	Right-handed alpha
Helix 87	AJ6	C	271	322	Right-handed alpha
Helix 88	AJ7	C	329	331	Right-handed 310
Helix 89	AJ8	C	332	344	Right-handed alpha
Helix 90	AJ9	C	344	352	Right-handed alpha
Helix 91	AK1	C	359	367	Right-handed alpha
Helix 92	AK2	C	372	384	Right-handed alpha
Helix 93	AK3	C	387	421	Right-handed alpha
Helix 94	AK4	C	421	426	Right-handed alpha
Helix 95	AK5	C	429	445	Right-handed alpha
Helix 96	AK6	C	446	450	Right-handed 310
Helix 97	AK7	C	452	464	Right-handed alpha
Helix 98	AK8	C	467	482	Right-handed alpha
Helix 99	AK9	C	485	498	Right-handed alpha
Helix 100	AL1	C	502	511	Right-handed alpha
Helix 101	AL2	C	511	532	Right-handed alpha
Helix 102	AL3	C	552	582	Right-handed alpha
Helix 103	AL4	D	12	23	Right-handed alpha
Helix 104	AL5	D	24	29	Right-handed alpha
Helix 105	AL6	D	29	38	Right-handed alpha
Helix 106	AL7	D	40	54	Right-handed alpha
Helix 107	AL8	D	54	70	Right-handed alpha
Helix 108	AL9	D	72	81	Right-handed alpha
Helix 109	AM1	D	82	84	Right-handed 310
Helix 110	AM2	D	85	115	Right-handed alpha
Helix 111	AM3	D	136	142	Right-handed alpha
Helix 112	AM4	D	143	151	Right-handed alpha
Helix 113	AM5	D	167	188	Right-handed alpha
Helix 114	AM6	D	192	199	Right-handed alpha
Helix 115	AM7	D	201	215	Right-handed alpha
Helix 116	AM8	D	219	229	Right-handed alpha
Helix 117	AM9	D	237	253	Right-handed alpha
Helix 118	AN1	D	257	265	Right-handed alpha
Helix 119	AN2	D	271	322	Right-handed alpha
Helix 120	AN3	D	329	331	Right-handed 310
Helix 121	AN4	D	332	344	Right-handed alpha
Helix 122	AN5	D	344	352	Right-handed alpha
Helix 123	AN6	D	359	367	Right-handed alpha
Helix 124	AN7	D	372	384	Right-handed alpha
Helix 125	AN8	D	387	421	Right-handed alpha
Helix 126	AN9	D	421	426	Right-handed alpha
Helix 127	AO1	D	429	445	Right-handed alpha
Helix 128	AO2	D	446	450	Right-handed 310
Helix 129	AO3	D	452	464	Right-handed alpha
Helix 130	AO4	D	467	482	Right-handed alpha
Helix 131	AO5	D	485	498	Right-handed alpha
Helix 132	AO6	D	502	511	Right-handed alpha
Helix 133	AO7	D	511	532	Right-handed alpha
Helix 134	AO8	D	552	582	Right-handed alpha

There are 10 sheets in PDB entry 8P31. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	132	133	first strand
Strand 2	A	141	142	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	262	263	first strand
Strand 2	A	487	488	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	347	350	first strand
Strand 2	A	356	359	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	670	673	first strand
Strand 2	A	680	685	anti-parallel
Strand 3	A	618	622	anti-parallel
Strand 4	A	722	723	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	132	133	first strand
Strand 2	B	141	142	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	262	263	first strand
Strand 2	B	487	488	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	347	350	first strand
Strand 2	B	356	359	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	670	673	first strand
Strand 2	B	680	685	anti-parallel
Strand 3	B	618	622	anti-parallel
Strand 4	B	722	723	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	535	540	first strand
Strand 2	C	545	550	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	535	540	first strand
Strand 2	D	545	550	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8P31

Analysis of interatomic Contacts of Structural Units in PDB entry:
8P31