Analysis of interatomic Contacts of Structural Units in PDB entry:
8P39


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8P39 entry

There are 2 chains in PDB entry 8P39 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 120ASN 676
B
 ILE 89GLY 736
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 48 helices in PDB entry 8P39. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
121 140Right-handed alpha
Helix 2
AA2
A
144 153Right-handed alpha
Helix 3
AA3
A
175 183Right-handed alpha
Helix 4
AA4
A
196 211Right-handed alpha
Helix 5
AA5
A
212 215Right-handed 310
Helix 6
AA6
A
223 228Right-handed alpha
Helix 7
AA7
A
229 238Right-handed alpha
Helix 8
AA8
A
239 245Right-handed alpha
Helix 9
AA9
A
274 302Right-handed alpha
Helix 10
AB1
A
322 339Right-handed alpha
Helix 11
AB2
A
367 382Right-handed alpha
Helix 12
AB3
A
442 450Right-handed alpha
Helix 13
AB4
A
455 486Right-handed alpha
Helix 14
AB5
A
487 488Right-handed 310
Helix 15
AB6
A
489 493Right-handed 310
Helix 16
AB7
A
512 516Right-handed 310
Helix 17
AB8
A
528 534Right-handed alpha
Helix 18
AB9
A
544 570Right-handed alpha
Helix 19
AC1
A
585 595Right-handed alpha
Helix 20
AC2
A
620 635Right-handed alpha
Helix 21
AC3
A
652 666Right-handed alpha
Helix 22
AC4
B
89 93Right-handed 310
Helix 23
AC5
B
94 104Right-handed alpha
Helix 24
AC6
B
121 142Right-handed alpha
Helix 25
AC7
B
144 153Right-handed alpha
Helix 26
AC8
B
163 167Right-handed 310
Helix 27
AC9
B
176 183Right-handed alpha
Helix 28
AD1
B
197 213Right-handed alpha
Helix 29
AD2
B
223 229Right-handed alpha
Helix 30
AD3
B
229 248Right-handed alpha
Helix 31
AD4
B
251 255Right-handed 310
Helix 32
AD5
B
271 276Right-handed 310
Helix 33
AD6
B
277 305Right-handed alpha
Helix 34
AD7
B
322 339Right-handed alpha
Helix 35
AD8
B
367 382Right-handed alpha
Helix 36
AD9
B
443 450Right-handed alpha
Helix 37
AE1
B
451 453Right-handed 310
Helix 38
AE2
B
455 487Right-handed alpha
Helix 39
AE3
B
489 493Right-handed 310
Helix 40
AE4
B
503 507Right-handed 310
Helix 41
AE5
B
512 520Right-handed 310
Helix 42
AE6
B
547 570Right-handed alpha
Helix 43
AE7
B
586 595Right-handed alpha
Helix 44
AE8
B
620 635Right-handed alpha
Helix 45
AE9
B
646 650Right-handed 310
Helix 46
AF1
B
653 666Right-handed alpha
Helix 47
AF2
B
716 720Right-handed 310
Helix 48
AF3
B
721 729Right-handed alpha
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There are 6 sheets in PDB entry 8P39. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
156 158first strand
Strand 2
A
434 441anti-parallel
Strand 3
A
520 526parallel
Strand 4
A
573 577parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
172 173first strand
Strand 2
A
219 220parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
314 317first strand
Strand 2
A
350 354parallel
Strand 3
A
385 387parallel
Strand 4
A
670 674anti-parallel
Strand 5
A
641 644parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
156 158first strand
Strand 2
B
435 442anti-parallel
Strand 3
B
521 527parallel
Strand 4
B
573 575parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
172 173first strand
Strand 2
B
219 221parallel
Strand 3
B
313 317parallel
Strand 4
B
350 355parallel
Strand 5
B
385 388parallel
Strand 6
B
670 674anti-parallel
Strand 7
B
641 644parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
677 678first strand
Strand 2
B
705 708anti-parallel
Strand 3
B
713 714anti-parallel
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