Analysis of interatomic Contacts of Structural Units in PDB entry:
8P3H


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8P3H entry

There are 2 chains in PDB entry 8P3H (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER -35SER 170
B
 SER -35SER 167
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 8P3H. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
-32 -13Right-handed alpha
Helix 2
AA2
A
7 18Right-handed alpha
Helix 3
AA3
A
60 62Right-handed 310
Helix 4
AA4
A
63 69Right-handed alpha
Helix 5
AA5
A
85 103Right-handed alpha
Helix 6
AA6
A
126 138Right-handed alpha
Helix 7
AA7
A
151 165Right-handed alpha
Helix 8
AA8
B
-32 -10Right-handed alpha
Helix 9
AA9
B
7 18Right-handed alpha
Helix 10
AB1
B
60 68Right-handed alpha
Helix 11
AB2
B
82 88Right-handed alpha
Helix 12
AB3
B
88 99Right-handed alpha
Helix 13
AB4
B
123 135Right-handed alpha
Helix 14
AB5
B
148 164Right-handed alpha
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There are 2 sheets in PDB entry 8P3H. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 40first strand
Strand 2
A
47 57anti-parallel
Strand 3
A
-6 1parallel
Strand 4
A
77 82parallel
Strand 5
A
110 115parallel
Strand 6
A
141 142parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
30 39first strand
Strand 2
B
45 54anti-parallel
Strand 3
B
-6 2parallel
Strand 4
B
73 79parallel
Strand 5
B
106 112parallel
Strand 6
B
138 140parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il