Analysis of interatomic Contacts of Structural Units in PDB entry:
8P3U

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8P3U entry

There are 8 chains in PDB entry 8P3U (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 390	ARG 815
B	THR 390	ARG 815
C	THR 390	ARG 815
D	THR 390	ARG 815
E	ASP 5	ALA 209
F	ASP 5	ALA 209
G	ASP 5	ALA 209
H	ASP 5	ALA 209

There are 90 helices in PDB entry 8P3U. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	407	411	Right-handed 310
Helix 2	AA2	A	412	415	Right-handed 310
Helix 3	AA3	A	419	433	Right-handed alpha
Helix 4	AA4	A	458	465	Right-handed alpha
Helix 5	AA5	A	478	483	Right-handed alpha
Helix 6	AA6	A	511	515	Right-handed 310
Helix 7	AA7	A	518	542	Right-handed alpha
Helix 8	AA8	A	568	581	Right-handed alpha
Helix 9	AA9	A	591	622	Right-handed alpha
Helix 10	AB1	A	649	657	Right-handed alpha
Helix 11	AB2	A	660	673	Right-handed alpha
Helix 12	AB3	A	681	692	Right-handed alpha
Helix 13	AB4	A	702	710	Right-handed alpha
Helix 14	AB5	A	738	752	Right-handed alpha
Helix 15	AB6	A	753	764	Right-handed alpha
Helix 16	AB7	A	788	814	Right-handed alpha
Helix 17	AB8	B	407	411	Right-handed 310
Helix 18	AB9	B	413	415	Right-handed 310
Helix 19	AC1	B	419	433	Right-handed alpha
Helix 20	AC2	B	457	465	Right-handed alpha
Helix 21	AC3	B	478	483	Right-handed alpha
Helix 22	AC4	B	518	542	Right-handed alpha
Helix 23	AC5	B	568	581	Right-handed alpha
Helix 24	AC6	B	591	623	Right-handed alpha
Helix 25	AC7	B	631	638	Right-handed alpha
Helix 26	AC8	B	649	657	Right-handed alpha
Helix 27	AC9	B	660	673	Right-handed alpha
Helix 28	AD1	B	681	692	Right-handed alpha
Helix 29	AD2	B	702	711	Right-handed alpha
Helix 30	AD3	B	738	752	Right-handed alpha
Helix 31	AD4	B	753	763	Right-handed alpha
Helix 32	AD5	B	784	787	Right-handed 310
Helix 33	AD6	B	788	815	Right-handed alpha
Helix 34	AD7	C	407	411	Right-handed 310
Helix 35	AD8	C	412	415	Right-handed 310
Helix 36	AD9	C	419	433	Right-handed alpha
Helix 37	AE1	C	458	465	Right-handed alpha
Helix 38	AE2	C	478	483	Right-handed alpha
Helix 39	AE3	C	511	515	Right-handed 310
Helix 40	AE4	C	518	540	Right-handed alpha
Helix 41	AE5	C	568	581	Right-handed alpha
Helix 42	AE6	C	591	622	Right-handed alpha
Helix 43	AE7	C	632	638	Right-handed alpha
Helix 44	AE8	C	649	657	Right-handed alpha
Helix 45	AE9	C	660	672	Right-handed alpha
Helix 46	AF1	C	681	692	Right-handed alpha
Helix 47	AF2	C	702	711	Right-handed alpha
Helix 48	AF3	C	738	752	Right-handed alpha
Helix 49	AF4	C	753	764	Right-handed alpha
Helix 50	AF5	C	788	814	Right-handed alpha
Helix 51	AF6	D	407	411	Right-handed 310
Helix 52	AF7	D	412	415	Right-handed 310
Helix 53	AF8	D	419	433	Right-handed alpha
Helix 54	AF9	D	457	466	Right-handed alpha
Helix 55	AG1	D	478	483	Right-handed alpha
Helix 56	AG2	D	511	515	Right-handed 310
Helix 57	AG3	D	518	542	Right-handed alpha
Helix 58	AG4	D	568	581	Right-handed alpha
Helix 59	AG5	D	591	622	Right-handed alpha
Helix 60	AG6	D	631	638	Right-handed alpha
Helix 61	AG7	D	649	657	Right-handed alpha
Helix 62	AG8	D	660	673	Right-handed alpha
Helix 63	AG9	D	681	692	Right-handed alpha
Helix 64	AH1	D	702	711	Right-handed alpha
Helix 65	AH2	D	738	752	Right-handed alpha
Helix 66	AH3	D	753	764	Right-handed alpha
Helix 67	AH4	D	785	787	Right-handed 310
Helix 68	AH5	D	788	815	Right-handed alpha
Helix 69	AH6	E	6	30	Right-handed alpha
Helix 70	AH7	E	93	105	Right-handed alpha
Helix 71	AH8	E	105	128	Right-handed alpha
Helix 72	AH9	E	132	162	Right-handed alpha
Helix 73	AI1	E	176	209	Right-handed alpha
Helix 74	AI2	F	6	30	Right-handed alpha
Helix 75	AI3	F	93	94	Right-handed 310
Helix 76	AI4	F	96	96	Right-handed 310
Helix 77	AI5	F	97	105	Right-handed alpha
Helix 78	AI6	F	105	124	Right-handed alpha
Helix 79	AI7	F	132	162	Right-handed alpha
Helix 80	AI8	F	176	209	Right-handed alpha
Helix 81	AI9	G	6	30	Right-handed alpha
Helix 82	AJ1	G	93	105	Right-handed alpha
Helix 83	AJ2	G	105	128	Right-handed alpha
Helix 84	AJ3	G	132	162	Right-handed alpha
Helix 85	AJ4	G	176	209	Right-handed alpha
Helix 86	AJ5	H	6	30	Right-handed alpha
Helix 87	AJ6	H	93	105	Right-handed alpha
Helix 88	AJ7	H	105	126	Right-handed alpha
Helix 89	AJ8	H	132	162	Right-handed alpha
Helix 90	AJ9	H	176	209	Right-handed alpha

There are 26 sheets in PDB entry 8P3U. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	436	440	first strand
Strand 2	A	391	395	parallel
Strand 3	A	470	471	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	403	404	first strand
Strand 2	A	417	418	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	447	449	first strand
Strand 2	A	456	457	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	485	487	first strand
Strand 2	A	731	733	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	492	494	first strand
Strand 2	A	726	728	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	643	644	first strand
Strand 2	A	697	701	parallel
Strand 3	A	496	501	anti-parallel
Strand 4	A	716	719	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	436	440	first strand
Strand 2	B	391	395	parallel
Strand 3	B	470	471	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	403	404	first strand
Strand 2	B	417	418	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	485	487	first strand
Strand 2	B	731	733	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	492	494	first strand
Strand 2	B	726	728	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	642	644	first strand
Strand 2	B	696	701	parallel
Strand 3	B	496	500	anti-parallel
Strand 4	B	717	719	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	436	440	first strand
Strand 2	C	391	395	parallel
Strand 3	C	470	471	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	403	404	first strand
Strand 2	C	417	418	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	447	450	first strand
Strand 2	C	455	457	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	485	487	first strand
Strand 2	C	731	733	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	492	494	first strand
Strand 2	C	726	728	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	642	644	first strand
Strand 2	C	696	701	parallel
Strand 3	C	496	500	anti-parallel
Strand 4	C	717	719	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	436	440	first strand
Strand 2	D	391	395	parallel
Strand 3	D	470	471	parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	403	404	first strand
Strand 2	D	417	418	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	485	487	first strand
Strand 2	D	731	733	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	492	494	first strand
Strand 2	D	726	728	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	642	644	first strand
Strand 2	D	696	701	parallel
Strand 3	D	496	500	anti-parallel
Strand 4	D	717	719	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	77	79	first strand
Strand 2	E	65	68	anti-parallel
Strand 3	E	57	61	anti-parallel
Strand 4	E	34	38	anti-parallel
Strand 5	E	174	175	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	34	38	first strand
Strand 2	F	57	61	anti-parallel
Strand 3	F	65	68	anti-parallel
Strand 4	F	77	79	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	77	79	first strand
Strand 2	G	65	68	anti-parallel
Strand 3	G	57	61	anti-parallel
Strand 4	G	34	38	anti-parallel
Strand 5	G	174	175	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	77	79	first strand
Strand 2	H	65	68	anti-parallel
Strand 3	H	57	61	anti-parallel
Strand 4	H	34	38	anti-parallel
Strand 5	H	173	174	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8P3U

Analysis of interatomic Contacts of Structural Units in PDB entry:
8P3U