Analysis of interatomic Contacts of Structural Units in PDB entry:
8P49

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8P49 entry

There are 6 chains in PDB entry 8P49 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 16	PRO 392
B	PHE 17	THR 391
C	PHE 17	THR 391
D	PHE 17	THR 391
E	ASP 16	THR 391
F	ASP 16	GLY 389

There are106 helices in PDB entry 8P49. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	38	53	Right-handed alpha
Helix 2	AA2	A	56	58	Right-handed 310
Helix 3	AA3	A	78	80	Right-handed 310
Helix 4	AA4	A	81	91	Right-handed alpha
Helix 5	AA5	A	117	126	Right-handed alpha
Helix 6	AA6	A	129	135	Right-handed 310
Helix 7	AA7	A	142	145	Right-handed 310
Helix 8	AA8	A	148	156	Right-handed alpha
Helix 9	AA9	A	157	161	Right-handed 310
Helix 10	AB1	A	173	181	Right-handed alpha
Helix 11	AB2	A	232	237	Right-handed 310
Helix 12	AB3	A	249	254	Right-handed alpha
Helix 13	AB4	A	265	279	Right-handed alpha
Helix 14	AB5	A	304	309	Right-handed 310
Helix 15	AB6	A	323	336	Right-handed alpha
Helix 16	AB7	A	340	346	Right-handed 310
Helix 17	AB8	A	348	352	Right-handed 310
Helix 18	AB9	A	353	371	Right-handed alpha
Helix 19	AC1	A	375	388	Right-handed alpha
Helix 20	AC2	B	38	53	Right-handed alpha
Helix 21	AC3	B	56	58	Right-handed 310
Helix 22	AC4	B	81	91	Right-handed alpha
Helix 23	AC5	B	117	125	Right-handed alpha
Helix 24	AC6	B	131	135	Right-handed 310
Helix 25	AC7	B	142	145	Right-handed 310
Helix 26	AC8	B	148	156	Right-handed alpha
Helix 27	AC9	B	157	161	Right-handed 310
Helix 28	AD1	B	173	181	Right-handed alpha
Helix 29	AD2	B	232	237	Right-handed 310
Helix 30	AD3	B	249	253	Right-handed 310
Helix 31	AD4	B	265	279	Right-handed alpha
Helix 32	AD5	B	304	309	Right-handed 310
Helix 33	AD6	B	323	336	Right-handed alpha
Helix 34	AD7	B	341	346	Right-handed 310
Helix 35	AD8	B	348	352	Right-handed 310
Helix 36	AD9	B	353	371	Right-handed alpha
Helix 37	AE1	B	375	388	Right-handed alpha
Helix 38	AE2	C	38	53	Right-handed alpha
Helix 39	AE3	C	56	58	Right-handed 310
Helix 40	AE4	C	81	91	Right-handed alpha
Helix 41	AE5	C	117	125	Right-handed alpha
Helix 42	AE6	C	131	135	Right-handed 310
Helix 43	AE7	C	142	145	Right-handed 310
Helix 44	AE8	C	148	156	Right-handed alpha
Helix 45	AE9	C	157	161	Right-handed 310
Helix 46	AF1	C	173	181	Right-handed alpha
Helix 47	AF2	C	232	237	Right-handed 310
Helix 48	AF3	C	249	254	Right-handed alpha
Helix 49	AF4	C	265	279	Right-handed alpha
Helix 50	AF5	C	304	309	Right-handed 310
Helix 51	AF6	C	323	336	Right-handed alpha
Helix 52	AF7	C	341	345	Right-handed 310
Helix 53	AF8	C	348	352	Right-handed 310
Helix 54	AF9	C	353	371	Right-handed alpha
Helix 55	AG1	C	375	388	Right-handed alpha
Helix 56	AG2	D	38	54	Right-handed alpha
Helix 57	AG3	D	81	91	Right-handed alpha
Helix 58	AG4	D	117	126	Right-handed alpha
Helix 59	AG5	D	129	134	Right-handed 310
Helix 60	AG6	D	148	156	Right-handed alpha
Helix 61	AG7	D	157	161	Right-handed 310
Helix 62	AG8	D	173	181	Right-handed alpha
Helix 63	AG9	D	232	237	Right-handed 310
Helix 64	AH1	D	249	254	Right-handed alpha
Helix 65	AH2	D	265	279	Right-handed alpha
Helix 66	AH3	D	304	309	Right-handed 310
Helix 67	AH4	D	323	336	Right-handed alpha
Helix 68	AH5	D	341	345	Right-handed 310
Helix 69	AH6	D	348	352	Right-handed 310
Helix 70	AH7	D	353	371	Right-handed alpha
Helix 71	AH8	D	375	389	Right-handed alpha
Helix 72	AH9	E	38	53	Right-handed alpha
Helix 73	AI1	E	56	58	Right-handed 310
Helix 74	AI2	E	81	92	Right-handed alpha
Helix 75	AI3	E	117	126	Right-handed alpha
Helix 76	AI4	E	131	135	Right-handed 310
Helix 77	AI5	E	142	145	Right-handed 310
Helix 78	AI6	E	148	156	Right-handed alpha
Helix 79	AI7	E	157	161	Right-handed 310
Helix 80	AI8	E	173	181	Right-handed alpha
Helix 81	AI9	E	232	237	Right-handed 310
Helix 82	AJ1	E	249	254	Right-handed alpha
Helix 83	AJ2	E	265	279	Right-handed alpha
Helix 84	AJ3	E	304	309	Right-handed 310
Helix 85	AJ4	E	323	336	Right-handed alpha
Helix 86	AJ5	E	341	345	Right-handed 310
Helix 87	AJ6	E	348	352	Right-handed 310
Helix 88	AJ7	E	353	371	Right-handed alpha
Helix 89	AJ8	E	375	388	Right-handed alpha
Helix 90	AJ9	F	38	53	Right-handed alpha
Helix 91	AK1	F	56	58	Right-handed 310
Helix 92	AK2	F	82	91	Right-handed alpha
Helix 93	AK3	F	117	126	Right-handed alpha
Helix 94	AK4	F	142	145	Right-handed 310
Helix 95	AK5	F	148	156	Right-handed alpha
Helix 96	AK6	F	157	161	Right-handed 310
Helix 97	AK7	F	173	181	Right-handed alpha
Helix 98	AK8	F	232	237	Right-handed 310
Helix 99	AK9	F	249	253	Right-handed 310
Helix 100	AL1	F	265	279	Right-handed alpha
Helix 101	AL2	F	304	309	Right-handed 310
Helix 102	AL3	F	323	336	Right-handed alpha
Helix 103	AL4	F	340	346	Right-handed 310
Helix 104	AL5	F	348	352	Right-handed 310
Helix 105	AL6	F	353	371	Right-handed alpha
Helix 106	AL7	F	375	389	Right-handed alpha

There are 38 sheets in PDB entry 8P49. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	60	69	first strand
Strand 2	A	108	116	anti-parallel
Strand 3	A	29	36	anti-parallel
Strand 4	A	18	23	anti-parallel
Strand 5	A	94	97	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	75	76	first strand
Strand 2	A	101	102	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	139	140	first strand
Strand 2	A	182	183	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	223	227	first strand
Strand 2	A	258	262	parallel
Strand 3	A	297	302	parallel
Strand 4	A	164	168	parallel
Strand 5	A	315	319	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	186	189	first strand
Strand 2	A	216	219	anti-parallel
Strand 3	A	209	213	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	191	194	first strand
Strand 2	A	197	200	anti-parallel
Strand 3	A	245	247	parallel
Strand 4	A	239	242	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	280	285	first strand
Strand 2	A	288	293	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	18	22	first strand
Strand 2	B	31	36	anti-parallel
Strand 3	B	110	116	anti-parallel
Strand 4	B	60	67	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	75	76	first strand
Strand 2	B	101	102	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	139	140	first strand
Strand 2	B	182	183	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	223	227	first strand
Strand 2	B	258	262	parallel
Strand 3	B	297	302	parallel
Strand 4	B	164	168	parallel
Strand 5	B	315	319	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	186	189	first strand
Strand 2	B	216	219	anti-parallel
Strand 3	B	209	213	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	191	194	first strand
Strand 2	B	197	200	anti-parallel
Strand 3	B	245	247	parallel
Strand 4	B	239	242	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	280	285	first strand
Strand 2	B	288	293	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	18	23	first strand
Strand 2	C	29	36	anti-parallel
Strand 3	C	110	116	anti-parallel
Strand 4	C	60	67	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	139	140	first strand
Strand 2	C	182	183	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	223	227	first strand
Strand 2	C	258	262	parallel
Strand 3	C	297	302	parallel
Strand 4	C	164	168	parallel
Strand 5	C	315	319	parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	186	189	first strand
Strand 2	C	216	219	anti-parallel
Strand 3	C	209	213	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	191	194	first strand
Strand 2	C	197	200	anti-parallel
Strand 3	C	245	247	parallel
Strand 4	C	239	242	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	280	285	first strand
Strand 2	C	288	293	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	18	20	first strand
Strand 2	D	32	36	anti-parallel
Strand 3	D	110	116	anti-parallel
Strand 4	D	60	66	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	139	140	first strand
Strand 2	D	182	183	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	223	227	first strand
Strand 2	D	258	262	parallel
Strand 3	D	297	302	parallel
Strand 4	D	164	168	parallel
Strand 5	D	315	319	parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	186	189	first strand
Strand 2	D	216	219	anti-parallel
Strand 3	D	209	213	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	191	194	first strand
Strand 2	D	197	200	anti-parallel
Strand 3	D	245	247	parallel
Strand 4	D	239	242	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	280	285	first strand
Strand 2	D	288	293	anti-parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	60	69	first strand
Strand 2	E	108	116	anti-parallel
Strand 3	E	29	36	anti-parallel
Strand 4	E	17	23	anti-parallel
Strand 5	E	94	97	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	75	76	first strand
Strand 2	E	101	102	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	136	140	first strand
Strand 2	E	182	189	anti-parallel
Strand 3	E	216	219	anti-parallel
Strand 4	E	209	213	anti-parallel

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There are 5 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	223	227	first strand
Strand 2	E	258	262	parallel
Strand 3	E	297	302	parallel
Strand 4	E	164	168	parallel
Strand 5	E	315	319	parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	191	194	first strand
Strand 2	E	197	200	anti-parallel
Strand 3	E	245	247	parallel
Strand 4	E	239	242	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	280	285	first strand
Strand 2	E	288	293	anti-parallel

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There are 5 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	60	69	first strand
Strand 2	F	108	116	anti-parallel
Strand 3	F	29	36	anti-parallel
Strand 4	F	17	23	anti-parallel
Strand 5	F	94	97	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	75	76	first strand
Strand 2	F	101	102	anti-parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	136	140	first strand
Strand 2	F	182	189	anti-parallel
Strand 3	F	216	219	anti-parallel

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There are 5 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	223	227	first strand
Strand 2	F	258	262	parallel
Strand 3	F	297	302	parallel
Strand 4	F	164	168	parallel
Strand 5	F	315	319	parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	191	194	first strand
Strand 2	F	197	200	anti-parallel
Strand 3	F	245	247	parallel
Strand 4	F	239	242	anti-parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	280	285	first strand
Strand 2	F	288	293	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8P49

Analysis of interatomic Contacts of Structural Units in PDB entry:
8P49