Analysis of interatomic Contacts of Structural Units in PDB entry:
8P4Q

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8P4Q entry

There are 2 chains in PDB entry 8P4Q (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY -2	LYS 387
B	GLY -2	THR 304

There are160 helices in PDB entry 8P4Q. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	16	18	Right-handed 310
Helix 2	AA2	A	31	34	Right-handed 310
Helix 3	AA3	A	59	70	Right-handed alpha
Helix 4	AA4	A	79	84	Right-handed alpha
Helix 5	AA5	A	86	97	Right-handed alpha
Helix 6	AA6	A	101	110	Right-handed alpha
Helix 7	AA7	A	115	129	Right-handed alpha
Helix 8	AA8	A	138	153	Right-handed alpha
Helix 9	AA9	A	178	186	Right-handed alpha
Helix 10	AB1	A	197	207	Right-handed alpha
Helix 11	AB2	A	223	229	Right-handed alpha
Helix 12	AB3	A	233	253	Right-handed alpha
Helix 13	AB4	A	266	276	Right-handed alpha
Helix 14	AB5	A	284	289	Right-handed alpha
Helix 15	AB6	A	322	329	Right-handed alpha
Helix 16	AB7	A	339	352	Right-handed alpha
Helix 17	AB8	A	355	360	Right-handed alpha
Helix 18	AB9	A	368	372	Right-handed 310
Helix 19	AC1	A	375	382	Right-handed alpha
Helix 20	AC2	A	383	387	Right-handed 310
Helix 21	AC3	B	16	18	Right-handed 310
Helix 22	AC4	B	31	34	Right-handed 310
Helix 23	AC5	B	59	70	Right-handed alpha
Helix 24	AC6	B	79	84	Right-handed alpha
Helix 25	AC7	B	87	97	Right-handed alpha
Helix 26	AC8	B	101	110	Right-handed alpha
Helix 27	AC9	B	115	129	Right-handed alpha
Helix 28	AD1	B	138	153	Right-handed alpha
Helix 29	AD2	B	178	186	Right-handed alpha
Helix 30	AD3	B	197	207	Right-handed alpha
Helix 31	AD4	B	223	229	Right-handed alpha
Helix 32	AD5	B	233	253	Right-handed alpha
Helix 33	AD6	B	266	276	Right-handed alpha
Helix 34	AD7	B	284	289	Right-handed alpha
Helix 35	AD8	B	322	329	Right-handed alpha
Helix 36	AD9	B	339	352	Right-handed alpha
Helix 37	AE1	B	355	360	Right-handed alpha
Helix 38	AE2	B	368	372	Right-handed 310
Helix 39	AE3	B	375	382	Right-handed alpha
Helix 40	AE4	B	383	387	Right-handed 310
Helix 41	AE5	C	16	18	Right-handed 310
Helix 42	AE6	C	31	34	Right-handed 310
Helix 43	AE7	C	59	70	Right-handed alpha
Helix 44	AE8	C	79	84	Right-handed alpha
Helix 45	AE9	C	87	97	Right-handed alpha
Helix 46	AF1	C	101	110	Right-handed alpha
Helix 47	AF2	C	115	129	Right-handed alpha
Helix 48	AF3	C	138	153	Right-handed alpha
Helix 49	AF4	C	178	186	Right-handed alpha
Helix 50	AF5	C	197	208	Right-handed alpha
Helix 51	AF6	C	223	229	Right-handed alpha
Helix 52	AF7	C	233	253	Right-handed alpha
Helix 53	AF8	C	266	276	Right-handed alpha
Helix 54	AF9	C	284	289	Right-handed alpha
Helix 55	AG1	C	322	329	Right-handed alpha
Helix 56	AG2	C	339	352	Right-handed alpha
Helix 57	AG3	C	355	360	Right-handed alpha
Helix 58	AG4	C	368	372	Right-handed 310
Helix 59	AG5	C	375	382	Right-handed alpha
Helix 60	AG6	C	383	387	Right-handed 310
Helix 61	AG7	D	16	18	Right-handed 310
Helix 62	AG8	D	31	34	Right-handed 310
Helix 63	AG9	D	59	70	Right-handed alpha
Helix 64	AH1	D	79	83	Right-handed 310
Helix 65	AH2	D	87	97	Right-handed alpha
Helix 66	AH3	D	101	110	Right-handed alpha
Helix 67	AH4	D	115	129	Right-handed alpha
Helix 68	AH5	D	138	153	Right-handed alpha
Helix 69	AH6	D	178	186	Right-handed alpha
Helix 70	AH7	D	197	208	Right-handed alpha
Helix 71	AH8	D	223	229	Right-handed alpha
Helix 72	AH9	D	233	253	Right-handed alpha
Helix 73	AI1	D	266	276	Right-handed alpha
Helix 74	AI2	D	284	289	Right-handed alpha
Helix 75	AI3	D	322	329	Right-handed alpha
Helix 76	AI4	D	339	352	Right-handed alpha
Helix 77	AI5	D	355	360	Right-handed alpha
Helix 78	AI6	D	368	372	Right-handed 310
Helix 79	AI7	D	375	382	Right-handed alpha
Helix 80	AI8	D	383	387	Right-handed 310
Helix 81	AI9	E	16	18	Right-handed 310
Helix 82	AJ1	E	31	34	Right-handed 310
Helix 83	AJ2	E	59	70	Right-handed alpha
Helix 84	AJ3	E	79	84	Right-handed alpha
Helix 85	AJ4	E	87	97	Right-handed alpha
Helix 86	AJ5	E	101	110	Right-handed alpha
Helix 87	AJ6	E	115	129	Right-handed alpha
Helix 88	AJ7	E	138	153	Right-handed alpha
Helix 89	AJ8	E	178	186	Right-handed alpha
Helix 90	AJ9	E	197	207	Right-handed alpha
Helix 91	AK1	E	223	229	Right-handed alpha
Helix 92	AK2	E	233	253	Right-handed alpha
Helix 93	AK3	E	266	276	Right-handed alpha
Helix 94	AK4	E	284	289	Right-handed alpha
Helix 95	AK5	E	322	329	Right-handed alpha
Helix 96	AK6	E	339	352	Right-handed alpha
Helix 97	AK7	E	355	360	Right-handed alpha
Helix 98	AK8	E	368	372	Right-handed 310
Helix 99	AK9	E	375	382	Right-handed alpha
Helix 100	AL1	E	383	387	Right-handed 310
Helix 101	AL2	F	16	18	Right-handed 310
Helix 102	AL3	F	31	34	Right-handed 310
Helix 103	AL4	F	59	70	Right-handed alpha
Helix 104	AL5	F	79	83	Right-handed 310
Helix 105	AL6	F	87	97	Right-handed alpha
Helix 106	AL7	F	101	110	Right-handed alpha
Helix 107	AL8	F	115	129	Right-handed alpha
Helix 108	AL9	F	138	153	Right-handed alpha
Helix 109	AM1	F	178	186	Right-handed alpha
Helix 110	AM2	F	197	208	Right-handed alpha
Helix 111	AM3	F	223	229	Right-handed alpha
Helix 112	AM4	F	233	253	Right-handed alpha
Helix 113	AM5	F	266	276	Right-handed alpha
Helix 114	AM6	F	284	289	Right-handed alpha
Helix 115	AM7	F	322	329	Right-handed alpha
Helix 116	AM8	F	339	352	Right-handed alpha
Helix 117	AM9	F	355	360	Right-handed alpha
Helix 118	AN1	F	368	372	Right-handed 310
Helix 119	AN2	F	375	382	Right-handed alpha
Helix 120	AN3	F	383	387	Right-handed 310
Helix 121	AN4	G	16	18	Right-handed 310
Helix 122	AN5	G	31	34	Right-handed 310
Helix 123	AN6	G	59	70	Right-handed alpha
Helix 124	AN7	G	79	84	Right-handed alpha
Helix 125	AN8	G	87	97	Right-handed alpha
Helix 126	AN9	G	101	110	Right-handed alpha
Helix 127	AO1	G	115	129	Right-handed alpha
Helix 128	AO2	G	138	153	Right-handed alpha
Helix 129	AO3	G	178	186	Right-handed alpha
Helix 130	AO4	G	197	208	Right-handed alpha
Helix 131	AO5	G	223	229	Right-handed alpha
Helix 132	AO6	G	233	253	Right-handed alpha
Helix 133	AO7	G	266	276	Right-handed alpha
Helix 134	AO8	G	284	289	Right-handed alpha
Helix 135	AO9	G	322	329	Right-handed alpha
Helix 136	AP1	G	339	352	Right-handed alpha
Helix 137	AP2	G	355	360	Right-handed alpha
Helix 138	AP3	G	368	372	Right-handed 310
Helix 139	AP4	G	375	382	Right-handed alpha
Helix 140	AP5	G	383	387	Right-handed 310
Helix 141	AP6	H	16	18	Right-handed 310
Helix 142	AP7	H	31	34	Right-handed 310
Helix 143	AP8	H	59	70	Right-handed alpha
Helix 144	AP9	H	79	84	Right-handed alpha
Helix 145	AQ1	H	87	97	Right-handed alpha
Helix 146	AQ2	H	101	110	Right-handed alpha
Helix 147	AQ3	H	115	129	Right-handed alpha
Helix 148	AQ4	H	138	153	Right-handed alpha
Helix 149	AQ5	H	178	186	Right-handed alpha
Helix 150	AQ6	H	197	208	Right-handed alpha
Helix 151	AQ7	H	223	229	Right-handed alpha
Helix 152	AQ8	H	233	253	Right-handed alpha
Helix 153	AQ9	H	266	276	Right-handed alpha
Helix 154	AR1	H	284	289	Right-handed alpha
Helix 155	AR2	H	322	329	Right-handed alpha
Helix 156	AR3	H	339	352	Right-handed alpha
Helix 157	AR4	H	355	360	Right-handed alpha
Helix 158	AR5	H	368	372	Right-handed 310
Helix 159	AR6	H	375	382	Right-handed alpha
Helix 160	AR7	H	383	387	Right-handed 310

There are 40 sheets in PDB entry 8P4Q. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3	6	first strand
Strand 2	A	9	13	anti-parallel
Strand 3	B	363	366	parallel
Strand 4	B	20	23	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	20	22	first strand
Strand 2	A	364	366	anti-parallel
Strand 3	D	9	13	parallel
Strand 4	D	3	6	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	28	29	first strand
Strand 2	D	168	169	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	38	40	first strand
Strand 2	A	43	45	anti-parallel

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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	49	51	first strand
Strand 2	A	72	76	parallel
Strand 3	A	134	137	parallel
Strand 4	A	156	160	parallel
Strand 5	A	190	195	parallel
Strand 6	A	211	214	parallel
Strand 7	A	258	261	parallel
Strand 8	A	280	283	parallel
Strand 9	A	49	51	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	168	169	first strand
Strand 2	B	28	29	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	298	300	first strand
Strand 2	A	314	316	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3	6	first strand
Strand 2	B	9	13	anti-parallel
Strand 3	C	364	366	parallel
Strand 4	C	20	22	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	38	40	first strand
Strand 2	B	43	45	anti-parallel

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There are 9 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	49	51	first strand
Strand 2	B	72	76	parallel
Strand 3	B	134	137	parallel
Strand 4	B	156	160	parallel
Strand 5	B	190	195	parallel
Strand 6	B	211	214	parallel
Strand 7	B	258	261	parallel
Strand 8	B	280	283	parallel
Strand 9	B	49	51	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	168	169	first strand
Strand 2	C	28	29	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	298	300	first strand
Strand 2	B	314	316	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	6	first strand
Strand 2	C	9	13	anti-parallel
Strand 3	D	363	366	parallel
Strand 4	D	20	23	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	38	40	first strand
Strand 2	C	43	45	anti-parallel

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There are 9 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	49	51	first strand
Strand 2	C	72	76	parallel
Strand 3	C	134	137	parallel
Strand 4	C	156	160	parallel
Strand 5	C	190	195	parallel
Strand 6	C	211	214	parallel
Strand 7	C	258	261	parallel
Strand 8	C	280	283	parallel
Strand 9	C	49	51	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	168	169	first strand
Strand 2	D	28	29	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	298	300	first strand
Strand 2	C	314	316	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	38	40	first strand
Strand 2	D	43	45	anti-parallel

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There are 9 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	49	51	first strand
Strand 2	D	72	76	parallel
Strand 3	D	134	137	parallel
Strand 4	D	156	160	parallel
Strand 5	D	190	195	parallel
Strand 6	D	211	214	parallel
Strand 7	D	258	261	parallel
Strand 8	D	280	283	parallel
Strand 9	D	49	51	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	298	300	first strand
Strand 2	D	314	316	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	3	6	first strand
Strand 2	E	9	13	anti-parallel
Strand 3	H	363	366	parallel
Strand 4	H	20	23	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	20	23	first strand
Strand 2	E	363	366	anti-parallel
Strand 3	F	9	13	parallel
Strand 4	F	3	6	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	28	29	first strand
Strand 2	F	168	169	parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	38	40	first strand
Strand 2	E	43	45	anti-parallel

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There are 9 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	49	51	first strand
Strand 2	E	72	76	parallel
Strand 3	E	134	137	parallel
Strand 4	E	156	160	parallel
Strand 5	E	190	195	parallel
Strand 6	E	211	214	parallel
Strand 7	E	258	261	parallel
Strand 8	E	280	283	parallel
Strand 9	E	49	51	parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	168	169	first strand
Strand 2	H	28	29	parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	298	300	first strand
Strand 2	E	314	316	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	20	22	first strand
Strand 2	F	364	366	anti-parallel
Strand 3	G	9	13	parallel
Strand 4	G	3	6	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	28	29	first strand
Strand 2	G	168	169	parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	38	40	first strand
Strand 2	F	43	45	anti-parallel

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There are 9 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	49	51	first strand
Strand 2	F	72	76	parallel
Strand 3	F	134	137	parallel
Strand 4	F	156	160	parallel
Strand 5	F	190	195	parallel
Strand 6	F	211	214	parallel
Strand 7	F	258	261	parallel
Strand 8	F	280	283	parallel
Strand 9	F	49	51	parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	298	300	first strand
Strand 2	F	314	316	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	20	23	first strand
Strand 2	G	363	366	anti-parallel
Strand 3	H	9	13	parallel
Strand 4	H	3	6	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	28	29	first strand
Strand 2	H	168	169	parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	38	40	first strand
Strand 2	G	43	45	anti-parallel

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There are 9 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	49	51	first strand
Strand 2	G	72	76	parallel
Strand 3	G	134	137	parallel
Strand 4	G	156	160	parallel
Strand 5	G	190	195	parallel
Strand 6	G	211	214	parallel
Strand 7	G	258	261	parallel
Strand 8	G	280	283	parallel
Strand 9	G	49	51	parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	298	300	first strand
Strand 2	G	314	316	anti-parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	38	40	first strand
Strand 2	H	43	45	anti-parallel

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There are 9 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	49	51	first strand
Strand 2	H	72	76	parallel
Strand 3	H	134	137	parallel
Strand 4	H	156	160	parallel
Strand 5	H	190	195	parallel
Strand 6	H	211	214	parallel
Strand 7	H	258	261	parallel
Strand 8	H	280	283	parallel
Strand 9	H	49	51	parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	298	300	first strand
Strand 2	H	314	316	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8P4Q

Analysis of interatomic Contacts of Structural Units in PDB entry:
8P4Q